Gene detail

Gene detail information of Glyur002959s00043118

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22142.1	2.00E-24	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
NR	XP_010490023.1	2.35E-61	PREDICTED: proline-rich extensin-like protein EPR1, partial [Camelina sativa]
Swissprot	tr\|Q00451\|PRF1_SOLLC	6.00E-35	36.4 kDa proline-rich protein
trEMBL	tr\|D7L1K8\|D7L1K8_ARALL	5.00E-61	Predicted protein {ECO:0000313\|EMBL:EFH61743.1}

Sequence

Transcript Sequence

>Glyur002959s00043118.1
TATTGAACTATGGCGAACTACGCTGTGGCCAATATCTTGATCCTTCTCTTGAACTTGAGTACCCTACTCAATGTTCTTGCTTGTCCTTATTGTCCATACCCTCCTAAACCATCACCACCAAAGGTGAAGCAACCACCGGTTCACAAGCCACCAAAGCACCCTCCAATAGTGATCAAACCACCGGTTCACAAACCACCAAAGTATCCTCCATATCACGGCAAGCCACCCTCTAATTGTCCACCCCCTCAATCATCACCACCAAAACCACCCCATGTCCCAACAAAACCCCCTCACTACCCCAAACCACCAATAGTGCACCCACCTCATGTCCCAAAACCTAGTCCTCATTACCCTAAACCCCCAATAGTGCGCCCACCTCATGTCCCAAAGCCTAGTCCTCATTACCCTAAACCCCCAATAGTGCACCCACCTTATGTCCCAAAACCCCCAGTTGTTAAACCCCCAATAGTACACCCACCTTATGTTCCAAAACCACCGGTTGTAAGACCACCCTATGTGCCTAAACCACCAGTAGTGACACCACCCTATACACCAAAGCCACCGGTTGTACCGGTGACACCACCTTATGTTCCTAAACCACCATTTGACACCCCATATGTTCCTAAGCCACCGGTGACACCACCTTATGTCCCTAAGCCTCCCATTGTGAAACCCCCCATTGTTTATCCTCCTCCTCATATCCCTGTACCCTCTCCAGTTGTACCATCACCACCCATTGTGACACCACCAACACCACCTTACACCCCTCCTGTTGTGACACCGCCTTACACCCCACCTGTGGTTACTCCACCAACACCACCTTACACACCTCCTGTTGTGACACCACCTTACACCCCACCAGTGGTTACTCCNCCAACACCACCTGTGGTTACTCCACCTAGCCCACCGACTCAAGCGCCGTGTCCTCCACCGTCACCAACGCCAACACCGGTGGTGCCGTATCCACCTCCGGCACAACCCACGTGCCCCATTGACGCGTTGAAGCTGGGTGCGTGTGTGGATGTGCTTGGTGGACTCATACACATTGGCATTGGTGGGAATGCTAAACAGGCTTGTTGTCCTGTGCTTCAAGGGCTTGTGGACTTGGATGCTGCTGTGTGCCTCTGCACCACCATTAGGCTCAAGCTCCTTAACATCAACATCGTGCTCCCCATTGCTCTTCAGCTTCTCCTTGACTGTGGCAAGACTCCTCCTGAAGGATTTAAGTGTCCAGCAACAAGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02959	12183	13530	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002959s00043118.1	PF14547.1	Hydrophob_seed	325	408	5.40E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3359.030
SRR1783600	control	3047.141
SRR1783602	moderate drought stress	1625.031
SRR1811619	moderate drought stress	1786.460

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1158.401
DRR006520	Root Summer glycyrrhizin high producing strain	1106.632
DRR006521	Root Winter glycyrrhizin high producing strain	1174.833
DRR006522	Root Winter glycyrrhizin high producing strain	1144.109
DRR006523	Root Summer glycyrrhizin low producing strain	620.507
DRR006524	Root Summer glycyrrhizin low producing strain	666.071
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.705
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.454

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	318.242
SRR2868004	Drought Stress (root)	176.340
SRR2967015	Control (root)	259.328

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.223
SRR9715740	Leaf	5.521
SRR9715741	Leaf	36.555
SRR9715739	Root	1868.898
SRR9715742	Root	1763.935
SRR9715743	Root	1700.502

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	87.175
SRR8749028	MeJA induced 9h	16.123
SRR8749029	MeJA induced 9h	102.295
SRR8749030	Uninduced	4.003
SRR8749031	Uninduced	5.854
SRR8749032	Uninduced	32.049

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1185.487
SRR8400027	Control - Root	1244.649