Gene detail information of Glyur002955s00037986 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24120.1 | 0 | YELLOW STRIPE like 1 |
| NR | XP_007161580.1 | 0 | hypothetical protein PHAVU_001G081600g [Phaseolus vulgaris] |
| COG | YP_004271220.1 | 9.00E-40 | oligopeptide transporter [Planctomyces brasiliensis DSM 5305] |
| Swissprot | tr|Q6R3L0|YSL1_ARATH | 0 | Metal-nicotianamine transporter YSL1 |
| trEMBL | tr|V7CWB4|V7CWB4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW33575.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02955 | 10782 | 14066 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002955s00037986.1 | PF03169.10 | OPT | 41 | 655 | 4.60E-124 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.055 |
| SRR1783600 | control | 29.393 |
| SRR1783602 | moderate drought stress | 30.115 |
| SRR1811619 | moderate drought stress | 29.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.592 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.418 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.116 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.913 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.454 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.167 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.906 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.714 |
| SRR2868004 | Drought Stress (root) | 6.605 |
| SRR2967015 | Control (root) | 7.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 41.022 |
| SRR9715740 | Leaf | 70.252 |
| SRR9715741 | Leaf | 55.519 |
| SRR9715739 | Root | 4.394 |
| SRR9715742 | Root | 13.281 |
| SRR9715743 | Root | 13.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.002 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.001 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.260 |
| SRR8400027 | Control - Root | 26.883 |