Gene detail

Gene detail information of Glyur002954s00038142

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58770.1	3.00E-93	Undecaprenyl pyrophosphate synthetase family protein
NR	XP_003544879.1	1.01E-141	PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Glycine max]
COG	NP_487035.1	4.00E-80	UDP pyrophosphate synthase [Nostoc sp. PCC 7120]
Swissprot	tr\|Q56Y11\|DDPS2_ARATH	7.00E-115	Dehydrodolichyl diphosphate synthase 2
trEMBL	tr\|I1MBA3\|I1MBA3_SOYBN	4.00E-142	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G37190.1}

Sequence

Transcript Sequence

>Glyur002954s00038142.1
CAACAATAACCTTTCCACTTTTTTTTTTTTTCAAATATTGTTATTTCATTCCACAAACAGAGAAAACACCGTTATCCCGATTCAGATGGTGTTCTCATTCAGGCTCCCTATTCAACTCCAGAATACTCCAACTCCTCCTCCAAAGACCACTAGCCCCGCCTCATCTCCTCGTTCTCATTATCATTACTGTCATACTTATCCCTGTTCCCAAACACACCGATTCCCTTCCCAGCCTAGGAGCATTACCAAACGCAACACTAATAAATGGTGTCGGAGGGAAGTCCCTCCTTCCGTCTCATCTCCTCCAAACGTGGCTCTTCAGGATGAGGCAGAAGGAGGGACTTCCCTCACGGAAGACTTGCCGGTGGAAGAGGAACCGGTTCAGCTGGAGCTTCGAGCGGAGCTGATGCCGAAGCATGTGGCGGTGATTATGGACGGGAACGGGAGGTGGGCAAAGATGAAGGGGTTGCCGCCGTCGGTGGGTCATGAGGCCGGCATAAAGTCGTTCAAGAGGCTNGTGAGGCTGTGCAACAGTTGGGGAATAAAGGTTCTCACCGTTTTCGTGTTCTCTATTGATAACTGGGTTCGCACTAAGGAGGAAGTTGATTTCTTGCTGAGCCTCCTTGAAAGAGCATTGAAATATGAAGCATTCCGAAGGGAAGGAATTAGAATATCTGTGATTGGAGATTCCTCAAAGCTCCCCGAGTATATGCAGAGATTGATATCTAGTGCTGAGGAGAGAACGAAGAATAATTCGAGACTCCAACTCATTATGGCATTTAGCTATAGCGGGAAATACGATGTTGTCCAAGCATGTAAAAGTGTCACCAAGAAAGTGAAAGATGGCCTTCTTCACTTGGATGACATCAACGAAAACATCATTGAACAGGAACTGGAGACTAACTGCACCAATTTCCCAAACCCGGATCTACTAATACGAACAAGTGGGGAAATGAGAGTTAGTAACTTCTTGTTGTGGCAATTAGCTTACACGGAGCTTTTCTTTAACCAAGAATTTTGGCCAGATTTTGGGAAGGAAGAGTTTGTGAAGGTCTTAACTTCATTTCAACAGAGACAGAGACGGTATGGTGGACGACATTCATAACCATTTGTTCTGCAATATGGTATATGGTGGCCTTTAAAATGATGANCAGCATATATATTAATTAGTTGGTATCTAGCCACTTAAATTATTCAGATTAAGCTAGTAGTGAGAAATTTGACTAATTACTGTTAATATGAAGTCATATGTTCGAACCCCCTTGCTTTAGGCATAACTAAGAAAGAATGCAAAGTAATTTTATCTTATGACTCAAATATGTTTTTAGTTCCTATAATATCGTGTTTTCATTTTTAGTCACTAGTGAGGTGGCTCATTTAAATTCACCTCACCTTGATTACCTCAGCGGGCTCGTCAATAATTTTTCCACATTATCAAAACCCTATCTCCCCCCTTTCCCCTTGCCATCCCCTTTCTCAAATCTCAACCACCGCCAACTTAAATCCCGAGCGTCGCACACCTTAACCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02954	1752	5903	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11778	DHDDS, RER2, SRT1	EC:2.5.1.87	Terpenoid backbone biosynthesis	map00900

Gene Ontology

molecular_function
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002954s00038142.1	PF01255.14	Prenyltransf	115	335	1.10E-76

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.385
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.675

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.125
SRR2868004	Drought Stress (root)	0.435
SRR2967015	Control (root)	0.296

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.752
SRR9715740	Leaf	7.078
SRR9715741	Leaf	6.218
SRR9715739	Root	0.032
SRR9715742	Root	0.140
SRR9715743	Root	0.160

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.037

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.033
SRR8400027	Control - Root	0.316