Gene detail information of Glyur002950s00039709 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29530.1 | 8.00E-09 | |
| NR | XP_003533837.1 | 2.55E-89 | PREDICTED: suppressor protein SRP40-like [Glycine max] |
| trEMBL | tr|I1L235|I1L235_SOYBN | 9.00E-90 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G10520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02950 | 21417 | 24257 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.341 |
| SRR1783600 | control | 7.223 |
| SRR1783602 | moderate drought stress | 8.602 |
| SRR1811619 | moderate drought stress | 8.704 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.844 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.837 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.748 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.162 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.907 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.288 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.140 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.621 |
| SRR2868004 | Drought Stress (root) | 1.071 |
| SRR2967015 | Control (root) | 0.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.818 |
| SRR9715740 | Leaf | 14.794 |
| SRR9715741 | Leaf | 12.090 |
| SRR9715739 | Root | 1.971 |
| SRR9715742 | Root | 4.803 |
| SRR9715743 | Root | 5.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.345 |
| SRR8749028 | MeJA induced 9h | 2.795 |
| SRR8749029 | MeJA induced 9h | 2.562 |
| SRR8749030 | Uninduced | 3.349 |
| SRR8749031 | Uninduced | 2.081 |
| SRR8749032 | Uninduced | 2.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.596 |
| SRR8400027 | Control - Root | 7.807 |