Gene detail

Gene detail information of Glyur002949s00046127.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G25560.1	2.00E-109	AP2/B3 transcription factor family protein
NR	XP_004514325.1	0	PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like [Cicer arietinum]
Swissprot	tr\|Q9C6M5\|RAVL1_ARATH	3.00E-141	AP2/ERF and B3 domain-containing transcription repressor TEM1
trEMBL	tr\|I1J6Q5\|I1J6Q5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G22260.1}

Sequence

Transcript Sequence

>Glyur002949s00046127.1
ATGGATGGAGGTAGTTGCACAGACGAAAGCACCACCACCGGCGACTCGTTCTCGATAACGGTATCACCGGTGAAGAAGCCGCCGTCATCTCCCCCGCCACCGAACAGCCTCTGCCGCGTCGGTAGTGGCNCGAGCGCAATCGTGGACCCGGACGGCAGCGGTGTTGGCGGCGGAGAAGCCGAGTCACGGAAGCTCCCGTCGTCGAAGTACAAGGGCGTGGTGCCGCAACCGAACGGGCGCTGGGGCGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGAACGTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCGGCGCAACGGTTCCGCGGCAAGGACGCCGTAACAAACTTCAAGCCGCTCGCCGGCGACGGTGACGGCGACAACGACGACGACGTTGAAGCCGAGTTCCTCAACTCGCATTCGAAGTCGGAGATCGTCGACATGCTGCGTAAGCACACATACAATGACGAGCTTGAGCAGAGCAAGCGAAGCCGCGGCTTCGTCGGCCGGCGTCGTGGCGGCGGGAATATCTCCGCCGTCTCGAATCTCGGCGGCGCGTGCGAGACGAAGGCGCGTGAGCCTCTGTTCGAGAAGGCCGTTACGCCGAGCGACGTCGGGAAGCTGAACCGTTTGGTCATACCGAAGCAGCACGCGGAGAGGCACTTTCCGTTACAGAAACCATCCGTGAATTGCGGCGCGGGAAGCGCGTCGGCGGCGAAGGGGGTGTTGTTGAACTTTGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTTCTCACTAAAGGTTGGAGCCGGTTCGTTAAGGAGAAGAACCTGAAAGCCGGTGACACGGTTTGTTTTCACCGCTCGACCGGACCGGACCGGCAGCTCTATATTGATTGGAAGGCAAGGAGGAATGTTGTTAATGTTAACGAGGTTGGGTTGTTTGTACCGGTCGGACCGGTTGTTGAGCCGGTTCAGATGGTTCGGCTCTTCGGGGTTAACATTTTGAAATTGCCTGGGTCCGATCCTGCTGGGTCCTGCGATGGCAAGAGGAGAGAGATGGAAATGTTTACGTTAGAGTGTTGCAAGAAGCCCAAGATCATTGGAGCTTTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02949	8636	9781	+

Gene family

Gene family	subfamily
Transcription Factors Family	RAV

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002949s00046127.1	PF00847.15	AP2	68	116	2.20E-11
Glyur002949s00046127.1	PF02362.16	B3	202	310	3.00E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.229
SRR1783600	control	2.911
SRR1783602	moderate drought stress	16.045
SRR1811619	moderate drought stress	15.792

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.770
DRR006520	Root Summer glycyrrhizin high producing strain	23.348
DRR006521	Root Winter glycyrrhizin high producing strain	36.789
DRR006522	Root Winter glycyrrhizin high producing strain	35.002
DRR006523	Root Summer glycyrrhizin low producing strain	57.257
DRR006524	Root Summer glycyrrhizin low producing strain	56.480
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.440
DRR006526	Leaf Summer glycyrrhizin high producing strain	53.561

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.685
SRR2868004	Drought Stress (root)	77.151
SRR2967015	Control (root)	143.262

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	140.168
SRR9715740	Leaf	151.444
SRR9715741	Leaf	154.506
SRR9715739	Root	39.174
SRR9715742	Root	48.812
SRR9715743	Root	45.583

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	297.375
SRR8749028	MeJA induced 9h	326.027
SRR8749029	MeJA induced 9h	229.209
SRR8749030	Uninduced	121.964
SRR8749031	Uninduced	113.986
SRR8749032	Uninduced	108.385

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.318
SRR8400027	Control - Root	21.366