Gene detail

Gene detail information of Glyur002947s00044698.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09780.1	0	CRINKLY4 related 1
NR	XP_004497498.1	0	PREDICTED: serine/threonine-protein kinase-like protein CCR1-like [Cicer arietinum]
COG	YP_001958461.1	2.00E-18	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9S7D9\|ACCR1_ARATH	0	Serine/threonine-protein kinase-like protein CCR1 (Precursor)
trEMBL	tr\|A0A072VVX2\|A0A072VVX2_MEDTR	0	Serine/Threonine-kinase CCR1-like protein {ECO:0000313\|EMBL:KEH42240.1}

Sequence

Transcript Sequence

>Glyur002947s00044698.1
ATGGGACCAATAACCGCATCGTTCGGGGAAGACGAGGTTTTCTGCGCCATCGACGCGAGTGGGAAGCAAGACGTGATTTGTTGGGGGAAGAACACCACAACGCCGCCGCCACTACCGTCTTCGTCCTACGTCAGCAACATCCCCGCCATGTCAGCACTCTCCGGCGGCGAGGGATTCCTTTGCGGCATTTTAGCAAACACCTCTCAAGCGTTCTGTTGGGCCGCANCATCCAGGCCCACAACCTCGGATCTCGATCTCGTTCCGCCGCCGTACCATAACATCGCCTACTCCCACATCGCCGCCGGCAAGGACCACGTCTGCGCCGTCAGGGGATTCTACTACGCCGATCGCGATTCCGGCACCGTGGATTGCTGGCAAATCTCGAGAAACTCCAACGGAACCTTAGTTGCCACCCTCAACGGCTCGTTCTCCGATCGATATTCTTCCGTCACCGATATGGAGCTGAGAAAAATTGTCTCCGGCGAAGGGTTCACCTGCGGCGAGGTCAGAGACGAAACAGGGTTACTCTGTTGGGGACCCAATTCGGCGAGATTGAANGTTTCCAAAAACGTGAATGAGAGTTTCGCGGTTTTGGCGGCGGGGAGGAGCGCCGTTTGTGGTGTTTCAAACTTTTCCGGCGAGTTGATTTGTTGGGGCGACCCTGATTCGTTTTCGGATCCTCCNCCGTCAGAGATCCGTTTGGTGTCTCTCTCCGCCGGTGCTAGCCACTTCTGCGGCGTACGAGAGGATAACCACGTGGTGGAGTGTTGGGGCGGTTTGAAATTGAATTTGAATTCCTCTTTGGTTCCCAAAGGTTACGGCTTTATGGCAATTGCTTCTTCAGATTACACCACTTGTGGTATACGTGAAGATGATCTTCTCTTAGATTGTTGGTTGGTCAACGCTTCAAAGTCAAAGAAACCAGATTTTGACCCTCCTTTGGAGCTNTCGAGTCCTGGTTTGTGTAGGTCTAGTTCTTGTGGTGTTGAAGAGTTTTCCTTCAATGTGAGTGTTCTCAANGAGCCTGATTTGACAAGTCTATGTGTTAGACAGGATTTGAGGATTTGTTCCCCTTGTGGGTATAACTGTTCTCAGGGTTTCTTCTTGTCTAGCCCTTGTACTCAAAACTCTGATAGAGTCTGCACAGCTTGTTCTCTTTGCCAGAACAGCTCTTGTTGGGGTGTTTGTGGAGTTCACTCTTCTCAAGGGTGGCATAATTGGCACCATATCAGAAAATGGGTGGTTATAATTGGTTCTTCTGCTTTGGGTTTCTTGTTGATTTTGACTTGTGGGTGTTGTCTTTTCCCACGTTTGGTTTCCAAAAGAGAAACCAAGTCTAAGTCTAAGTCTAAGTCTAAGCCTAAGTCCAAGTCCAAGTCCAAGTCTTGTATTGGAAAACATGAGCAGGAGGATGATGGTGATGATGTGAATGATGTTGCTGCTCTTAACTCTTCTGCTTCAGTTGCTTCTTGTCCTGGGGTGCCTCAGGTTTTCAGGCTTTCCGAGCTGAAAGATGCTACTAATGGGTTCAAGGAGTTTAATGAGCTTGGGAGGGGGAGTTATGGATTTGTCTACAAGGCTTGTTTGGCTGATGGGAGAGTTGTTGCTGTTAAGAGAGCAAATGCTGCTACTATTATACACACCAATAACCGTGACTTTGAGATGGAGTTGGAGATCCTTTGCAAGATTCGTCACTNTAATATTGTTAACTTGTTGGGTTATTGTGCTGAGATGGGGGAGAGGTTGCTTGTTTATGAGTATATGCCTCATGGGACACTTTATGATCACCTTCATGGTGGCCTTTCTCCTCTTAATTGGAGNCTCAGGATCAAGATAGCCATGCAGGCTGCAAAGGGTCTTGAGTATCTTCANAAGGAACTATTGCCTCCAATTGTGCATAGGGATCTCAAGAGTTCCAACATTCTTTTGGATTCCGAGTGGGGCGCTAGAATTGCGGATTTCGGGCTTCTTGCTTCGAGTGACAACAACAAGGATGTTCTCCTTAGTGGGGACTTGGAGAGCGATGTTTACAGCTTTGGGATTGTGTTGNTAGAGATTCTAAGTGGGAGGAAGGCTCATGACACAGATTTTGCTCCACCAAACGTGGTTGAGTGGGCAGTGCCTTTGATCAAACAGGGTAAGGCGGCTGTCATAATCGATCGCAACGTGGCTCTTCCGAGGAATGTTGAGCCTTTGCTTAAGCTTGCTGATATAGCAGGGCTTGCTGTGAGGGAGAATCCAAGTGAGCGTCCACCCTTGTCAGATATAGCATCTTGGTTGGAGCAAATTGTGAAGGACGGATTGATCCTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02947	1817	4129	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.4.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002947s00044698.1	PF00020.13	TNFR_c6	354	381	1.90E-05
Glyur002947s00044698.1	PF07714.12	Pkinase_Tyr	514	663	4.80E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.180
SRR1783600	control	3.161
SRR1783602	moderate drought stress	1.501
SRR1811619	moderate drought stress	1.463

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.318
DRR006520	Root Summer glycyrrhizin high producing strain	2.526
DRR006521	Root Winter glycyrrhizin high producing strain	0.408
DRR006522	Root Winter glycyrrhizin high producing strain	0.501
DRR006523	Root Summer glycyrrhizin low producing strain	3.857
DRR006524	Root Summer glycyrrhizin low producing strain	3.965
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.494
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.489

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.913
SRR2868004	Drought Stress (root)	19.359
SRR2967015	Control (root)	18.142

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.368
SRR9715740	Leaf	0.800
SRR9715741	Leaf	0.653
SRR9715739	Root	4.523
SRR9715742	Root	2.718
SRR9715743	Root	2.830

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.968
SRR8749028	MeJA induced 9h	0.808
SRR8749029	MeJA induced 9h	0.302
SRR8749030	Uninduced	0.523
SRR8749031	Uninduced	0.066
SRR8749032	Uninduced	0.200

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.815
SRR8400027	Control - Root	11.337