Gene detail

Gene detail information of Glyur002944s00042478

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20820.1	1.00E-101	FAD-binding Berberine family protein
NR	XP_004504926.1	0	PREDICTED: cannabidiolic acid synthase-like 2-like [Cicer arietinum]
COG	YP_001252809.1	2.00E-32	FAD-dependent oxidoreductase [Clostridium botulinum A str. ATCC 3502]
Swissprot	tr\|Q33DQ2\|THCAI_CANSA	1.00E-114	Inactive tetrahydrocannabinolic acid synthase (Precursor)
trEMBL	tr\|V7CLG0\|V7CLG0_PHAVU	1.00E-174	Uncharacterized protein {ECO:0000313\|EMBL:ESW30994.1}

Sequence

Transcript Sequence

>Glyur002944s00042478.1
ATGATGCCTCTAAGCTCATATTTTGCTGTTGTTGCAATTGCTTTCTTGTTTTCTGTTGCATCTTCTACGGCTGATAATCATGCAAGCTTCTTTCAATGTCTTCAAAGTTATTCTCATAACTCCACTTCAATCTCTAAGGTTGTTTACACCCAAACCAACTCCTCTTACTCATCGATACTGCGGTTTTCCACTCATAACCCCAGATTCACATCCAACGCAACTCCAAAACCCCTTGTTATTGTGACACCTCTTCAAGTATCCGAAATTCAAGTCACCATAATCTGTTCCCAACGCCATGGCATGCATATTCGAACTCGAAGTGGTGGGCATGACTATGAGGGTCTATCCTATGTTTCCCATGTTGATCCATTTGTGGTCATTGATCTCATAAACCTTCGAGAAATCCAAGTAGACGTAGAAAATAGCACTGCATGGGTTGAAGCAGGGGCAACTATTGGTGAACTTTACTATAGCATAAGCCAGAAAAGCAGAACCCTTGGCTTCCCTTCAGGTTTTTGCCCCACCGTAGGTGTTGGTGGACAAATCAGCGGCGGTGGCTATGGATCCTTGTTGCGCAAATACGGTCTTGCCGCAGATCATGTAATTGATGCCCGCATAATTGATGTGAAGGGTAGGCTTCTTGACAGNGAAGCAATGGGTGAGGATCTGTTTTGGGCCATTAGAGGAGGTGGAGGGGCAAGCTTTGGAGTCATCACAGCGTGGAAGATAAAATTGGTTCCCGTTCCACCAACTGTGACAGTGTTCACGGTTTCCAAGACATTGGAACAAAATGCAACCAAGCTTATTCACAAGTGGCAGCATGTGGCAAATAAACTTGATGAGGACCTATTCATTAGGATCAGCTTGGCGAGGGTAAATTCAAGTCAAACAAGGAAGCTAACAATACAAGCCACATTTGAATCTTTGTTTCTTGGAGGCGTGGATAGGCTCCTTCCTTTGATGCAAGAGGTGTTCCCAGAGCTGGGATTGATTAGAGAAGACTGTACTGAGATGAGTTGGGTAGAGTCAGTCCTCTACCTTTATGAATTTACAAGTGGTCAACCTCCTCTTGCGTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02944	30729	31808	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002944s00042478.1	PF01565.18	FAD_binding_4	77	215	2.70E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.215
SRR1783600	control	13.045
SRR1783602	moderate drought stress	6.335
SRR1811619	moderate drought stress	6.826

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.965
SRR2868004	Drought Stress (root)	128.798
SRR2967015	Control (root)	56.699

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.077
SRR9715740	Leaf	0.165
SRR9715741	Leaf	0.060
SRR9715739	Root	1.849
SRR9715742	Root	2.736
SRR9715743	Root	2.735

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.079
SRR8749028	MeJA induced 9h	0.471
SRR8749029	MeJA induced 9h	0.089
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.026

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	91.833
SRR8400027	Control - Root	52.353