Gene detail

Gene detail information of Glyur002942s00044114

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71695.1	7.00E-86	Peroxidase superfamily protein
NR	KEH26066.1	0	peroxidase family protein [Medicago truncatula]
Swissprot	tr\|Q96520\|PER12_ARATH	9.00E-108	Peroxidase 12 (Precursor)
trEMBL	tr\|A0A072U9H8\|A0A072U9H8_MEDTR	0	Peroxidase family protein {ECO:0000313\|EMBL:KEH26066.1}

Sequence

Transcript Sequence

>Glyur002942s00044114.1
TTTGGTCATGAAAATCAAGTAATTAGCAAAGCAAACATGGCTAGTGCAAGTAGATCTCGTTCTTTGAACACAGTAGTGCTCTTGATTTCNTCACTTCTATTAGCTTCTCTAGTCCTTGTTGTTTCCTCCTCCTCTTCCGAGAGGAGAGTAGCAAGGCCTCCCATTGTGAANGGACTATCATGGGATTTCTATTGGTTGTCATGTCCAAGGGTTGAAAGGATTATAAGGAAACATCTTGAGGATGTGTTTNAGAAGGACAGTGGCCAAGCTCCTGGCATCCTTCGCCTCTTCTTCCATGATTGCTTTGCCCAGGGATGTGATGGGTCTATATTGTTGAATGGTGCTAATGGAGAACCCGACGAGAAGCAACACTTCTCCAACTTCGGTTTGAGGCNAGAAGCTCTTCAAACCATTGAAAACCTTCGGGCTCTCATCCGTAAGCAGTGTCCACGTGTTGTCACGTGCTCAGACGTCCTCGTTATCGCGGCGCGCGAAGCTGTTCGCCAATTAGGAGGCCCTGATTTTGATGTGCCATTGGGAAGAAAAGACAGNCTGACCTTCGACGCAAACGCACCAATCAATCTCCCAGCACCTTTTCTCCGAACCGATGAGCTTCTCGGCGTCTTTGGATCCAAAAACTTTGATGCCACCGATGTAGTTGCCCTCTCTGGGGCCCATACCTTCGGACGGACCCACTGTGGCTCACTATTCAANAGAACCACAGAATCAGACCCACCGATCGACCCAGAATTCAAGAAACAACTAGAAGCCACGTGTCCAAGTGCCNATTCCCCCAACACCGTTAACCTAGACGTTCGAAGCCCCGTCAAGTTCGACAACATGTACTACATCAACCTCTTGAACCGCCANGGAGTGTTCACCTCTGACCAGGACATAGCGACACACCCGAAAACTAAAGAGATTGTGAACAGCTTCGCTTCTAATCANAAGCAGTTTTTCGACAAGTTTGCCAATGCTTTTGTGAAGGTGAGCCAGTTGAGTGTGTTGACTGGAAATCAAGGAGAGATTCGAAAGTCATGCTTTGCTACAAATCNTAAGAAAATATCTAATAATAAGGTNGCATCTGTGGTGGAGGAAGTAGTGGAATTGGCTGAGANCCTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02942	7237	9967	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002942s00044114.1	PF00141.18	peroxidase	76	315	4.90E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.522
SRR1783600	control	5.602
SRR1783602	moderate drought stress	3.543
SRR1811619	moderate drought stress	3.660

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.114
DRR006520	Root Summer glycyrrhizin high producing strain	1.113
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.266
DRR006524	Root Summer glycyrrhizin low producing strain	0.390
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.164
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.164

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	765.777
SRR2868004	Drought Stress (root)	469.644
SRR2967015	Control (root)	732.274

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.617
SRR9715740	Leaf	0.461
SRR9715741	Leaf	1.370
SRR9715739	Root	24.549
SRR9715742	Root	27.385
SRR9715743	Root	25.072

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.414
SRR8749028	MeJA induced 9h	0.034
SRR8749029	MeJA induced 9h	0.772
SRR8749030	Uninduced	33.547
SRR8749031	Uninduced	17.574
SRR8749032	Uninduced	26.456

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	116.034
SRR8400027	Control - Root	14.019