Gene detail

Gene detail information of Glyur002941s00036700

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62030.1	6.00E-33	rotamase CYP 4
NR	AFK42902.1	5.83E-58	unknown [Lotus japonicus]
COG	YP_003442256.1	3.00E-39	peptidylprolyl isomerase [Allochromatium vinosum DSM 180]
Swissprot	tr\|Q41651\|CYPB_VICFA	1.00E-54	Peptidyl-prolyl cis-trans isomerase, chloroplastic (Precursor)
trEMBL	tr\|I3SRL0\|I3SRL0_LOTJA	2.00E-58	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|RuleBase:RU000493}

Sequence

Transcript Sequence

>Glyur002941s00036700.1
CTTATTTAGTGACTTCTTCTGTTCATCACATTAACCAAACCAACCCAACCCACCAACCAAGGCTTGAGAGTTGAGTCNGAGAATCAGCAAAAGAAGCAGCATTTCTTGGCGTTAGGCGTCTCTGGGCATGGCTTCTTCATTCTCAACTCAGTTGGTTCAATGTCAGAACCCACTTCCCCGTCTCTCTCATCTCCAGGGTAAAGATGTNTCTATTGTTCGAAGGTCGCATATGGTCTGTAGTAGCGGTACCATATCACAGATTGGTTACAGTAAAGCATTGGCATCAAGATCACACCATGGCTTGAGGTTTTCTGCTNCAAAACAATCTGGAGCAAGATCAATTAGATATAGGAGAATGACATGTGTCAGTGCTGCTGGAAATGTTCAAGAGCTGCAAGCCAAAGTGACTACCAAATGTTTCTTTGATGTAGAAGTTGGGGGTGAACCTGTGGGCAGGATTGTTTTGGGCCTATTTGGAGAGGTTGCTCCTAAAACAGTTGAAAATTTCCGTGCTTTGTGCACAGGCAAGCAATCAAGCTTTTCTGCAGCATTGTTCTTGTAGTTGGATTACTACACTGATTGGCTTGTGTAACGAACATTTTATAGATCAAGTTGAATAATCTTTGTGCAGGAGAGAAAGGATATGGNTACAAAGGATGCTCCTTCCATCGTATAATCAAAGAATTCATGATTCAAGGAGGGGACTTTACCGAGGGAGATGGAACTGGTGGAACTAGTATCTATGGTTCTAGTTTTGAAGATGAGAGTTTTGCCTTGAAGCATATCGGTCCTGGAGTTTTGAGTATGGCAAATGCCGGACCTAATACCAATGGTAGTCAATTTTTTATTTGCACTGTAAAGACCCCGTGGCTAGACAATCGCCATGTTGTGTTTGGGCACGTGATTGATGGAATGGATGTTGTGAGGACACTTGAGTCCCAGGAGACAAGCAGGGCATGGTCTGCTCTAGACACCAAATCTGAGCATCCCGCCCGCCACCAGTATGTTAGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02941	1779	4783	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000413 protein peptidyl-prolyl isomerization

GO:0006457 protein folding

molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002941s00036700.1	PF00160.16	Pro_isomerase	1	89	1.10E-26
Glyur002941s00036700.2	PF00160.16	Pro_isomerase	99	133	1.00E-05
Glyur002941s00036700.3	PF00160.16	Pro_isomerase	99	133	1.50E-05
Glyur002941s00036700.3	PF00160.16	Pro_isomerase	162	193	1.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.274
SRR1783600	control	36.643
SRR1783602	moderate drought stress	25.006
SRR1811619	moderate drought stress	24.443

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	62.166
DRR006520	Root Summer glycyrrhizin high producing strain	60.891
DRR006521	Root Winter glycyrrhizin high producing strain	37.472
DRR006522	Root Winter glycyrrhizin high producing strain	36.095
DRR006523	Root Summer glycyrrhizin low producing strain	49.830
DRR006524	Root Summer glycyrrhizin low producing strain	49.327
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.933
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.771

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	105.450
SRR2868004	Drought Stress (root)	82.857
SRR2967015	Control (root)	68.478

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	68.679
SRR9715740	Leaf	93.892
SRR9715741	Leaf	65.562
SRR9715739	Root	38.570
SRR9715742	Root	73.776
SRR9715743	Root	64.481

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.976
SRR8749028	MeJA induced 9h	25.558
SRR8749029	MeJA induced 9h	33.569
SRR8749030	Uninduced	27.475
SRR8749031	Uninduced	13.310
SRR8749032	Uninduced	19.156

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	132.535
SRR8400027	Control - Root	120.543