Gene detail information of Glyur002932s00039303 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65770.3 | 0 | little nuclei4 |
| NR | XP_004509046.1 | 0 | PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Cicer arietinum] |
| Swissprot | tr|Q9FLH0|NMCP_ARATH | 0 | Putative nuclear matrix constituent protein 1-like protein |
| trEMBL | tr|A0A072UNX6|A0A072UNX6_MEDTR | 0 | Nuclear matrix constituent-like protein, putative {ECO:0000313|EMBL:KEH31544.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02932 | 1689 | 8458 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.772 |
| SRR1783600 | control | 35.691 |
| SRR1783602 | moderate drought stress | 42.496 |
| SRR1811619 | moderate drought stress | 42.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 48.720 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 48.198 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.241 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.687 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 59.487 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 59.702 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.705 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.133 |
| SRR2868004 | Drought Stress (root) | 47.433 |
| SRR2967015 | Control (root) | 52.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.385 |
| SRR9715740 | Leaf | 26.197 |
| SRR9715741 | Leaf | 24.150 |
| SRR9715739 | Root | 1.790 |
| SRR9715742 | Root | 10.487 |
| SRR9715743 | Root | 9.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.242 |
| SRR8749028 | MeJA induced 9h | 30.457 |
| SRR8749029 | MeJA induced 9h | 24.036 |
| SRR8749030 | Uninduced | 12.822 |
| SRR8749031 | Uninduced | 11.982 |
| SRR8749032 | Uninduced | 6.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.948 |
| SRR8400027 | Control - Root | 39.843 |