Gene detail information of Glyur002924s00042922 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G73990.1 | 0 | signal peptide peptidase |
| NR | XP_004488395.1 | 0 | PREDICTED: protease 4-like [Cicer arietinum] |
| COG | YP_829050.1 | 2.00E-72 | signal peptide peptidase SppA, 67K type [Candidatus Solibacter usitatus Ellin6076] |
| Swissprot | tr|Q9C9C0|SPPA1_ARATH | 0 | Serine protease SPPA, chloroplastic (Precursor) |
| trEMBL | tr|V7AXS8|V7AXS8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW10379.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02924 | 2536 | 16289 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002924s00042922.1 | PF01343.13 | Peptidase_S49 | 259 | 398 | 1.40E-14 |
| Glyur002924s00042922.1 | PF01343.13 | Peptidase_S49 | 499 | 642 | 4.70E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.998 |
| SRR1783600 | control | 3.494 |
| SRR1783602 | moderate drought stress | 2.244 |
| SRR1811619 | moderate drought stress | 2.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.654 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.508 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.075 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.264 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.434 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.170 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.386 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.858 |
| SRR2868004 | Drought Stress (root) | 5.045 |
| SRR2967015 | Control (root) | 4.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.827 |
| SRR9715740 | Leaf | 17.399 |
| SRR9715741 | Leaf | 13.121 |
| SRR9715739 | Root | 0.882 |
| SRR9715742 | Root | 3.569 |
| SRR9715743 | Root | 3.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.435 |
| SRR8749028 | MeJA induced 9h | 3.055 |
| SRR8749029 | MeJA induced 9h | 0.989 |
| SRR8749030 | Uninduced | 0.892 |
| SRR8749031 | Uninduced | 0.550 |
| SRR8749032 | Uninduced | 0.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.365 |
| SRR8400027 | Control - Root | 6.438 |