Gene detail information of Glyur002922s00039159 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42910.1 | 6.00E-155 | Phosphoribosyltransferase family protein |
| NR | XP_003532095.1 | 0 | PREDICTED: ribose-phosphate pyrophosphokinase 4-like [Glycine max] |
| COG | YP_008154134.1 | 7.00E-24 | ribose-phosphate pyrophosphokinase [Sorangium cellulosum So0157-2] |
| Swissprot | tr|Q680A5|KPRS4_ARATH | 0 | Ribose-phosphate pyrophosphokinase 4 |
| trEMBL | tr|I1KY16|I1KY16_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G42220.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02922 | 8023 | 11975 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002922s00039159.1 | PF13793.1 | Pribosyltran_N | 78 | 190 | 2.60E-07 |
| Glyur002922s00039159.1 | PF00156.22 | Pribosyltran | 219 | 324 | 3.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.212 |
| SRR1783600 | control | 26.144 |
| SRR1783602 | moderate drought stress | 19.521 |
| SRR1811619 | moderate drought stress | 19.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.337 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.796 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.668 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.097 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.030 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.512 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.746 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 46.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.414 |
| SRR2868004 | Drought Stress (root) | 58.018 |
| SRR2967015 | Control (root) | 51.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 62.419 |
| SRR9715740 | Leaf | 51.550 |
| SRR9715741 | Leaf | 68.965 |
| SRR9715739 | Root | 22.324 |
| SRR9715742 | Root | 26.333 |
| SRR9715743 | Root | 26.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 33.506 |
| SRR8749028 | MeJA induced 9h | 37.157 |
| SRR8749029 | MeJA induced 9h | 30.188 |
| SRR8749030 | Uninduced | 15.699 |
| SRR8749031 | Uninduced | 10.964 |
| SRR8749032 | Uninduced | 8.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 44.473 |
| SRR8400027 | Control - Root | 41.877 |