Gene detail

Gene detail information of Glyur002921s00040296

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07720.1	2.00E-127	Galactose oxidase/kelch repeat superfamily protein
NR	XP_003596164.1	0	Nitrile-specifier protein [Medicago truncatula]
COG	YP_008154472.1	3.00E-20	hypothetical protein SCE1572_40550 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q93XW5\|NSP5_ARATH	2.00E-125	Nitrile-specifier protein 5
trEMBL	tr\|G7IH11\|G7IH11_MEDTR	0	Galactose oxidase/kelch repeat protein {ECO:0000313\|EMBL:AES66415.1}

Sequence

Transcript Sequence

>Glyur002921s00040296.1
GGCCAAAGCGTACCAAAGTGTCCTTAGACCAATCTCGCGGGCGAGTATTTGGTGCTATCCTCTTGGTGGATTCTTCCAGCAATGGCGGTACTTAATGGCAGTTGGTTCAAGCTTGATCAAAGTGGAATCGTGCAAGGAGCAAGGAGTTCACATGCTATTGCAGTAGTAGGACAGAAGGTGTATGCATTCGGCGGCGAGTTTGTGCCACGTGTCCCCGTCGATAACAAGCTACACGTGTTCGACCTAGAGACCTTGACATGGTCAGTGTCCGATGCATCCGGTAACATCCCACCGCCACGTGTCGGTGTCACAATGGCAGCAGTTGGTGAAACCATCTACGTNTTCGGTGGAAGGGACGCAGAGCACAGAGAGCTCAACGAACTCTATTCTTTCGACACTAAGACCAACAATTGGGCCTTGATTTCAAGTGNAGATATTGGGCCTCCTAACCGGAGCTACCACTCCATGACCTCCGACNACCGACACGTGTATGTTTTCGGTGGCTGTGGTGTCGCCGGAAGGCTCAATGATTTGTGGGCCTTTGATGTCGTTGATAGCAAGTGGGTTGAATTTCCTTCTCCCGGTGAAAATTGCAAGGGAAGAGGTGGGCCGGGCCTAGAAGTGGCCCAAGGAAAAATATGGGTTGTGTATGGTTTCGCTGGAATGGAAATGGACGACGTGTATTGCTTTGATCTGGGCCAAAAAACTTGGGCCCAAGTGGAAACAACTGGGTTGAAACCAACGGCCCGTAGTGTGTTTTCCACTTGTTGCAGTGGGAAACACATTGTTGTATATGGAGGGGAAATTGACCCTAGTGACCAAGGTCACATGGGTGCTGGCCAATTTTCCGGTGAGGTTTATGCATTGGACACAGAGACACTGTCGTGGGTTAGGTTGGATGATAGGGTGGAATCCAGCGGCCATCCGGGGCCTCGCGGTTGGTGCGCGTTCGCCGGTGCTCTCCGAGGCGGCCTGGAGGGATTGCTTGTGTATGGTGGCAACTCTCCTAGTAACGACAGGCTTGATGACATTTACTTCCTTGCTCTTTCTCAGAGTTAGTTGGTGAATGATAGTTAGCATGATGTTGTGATGAATTCTAAGTGTGGTCGTGATAAGAGGACAATATGGCATGTGATGTGAACTTAGGAAAAGTTGGTAATTGATATGTTCAGTTTGTGAATGTACTTGTGTGCGGGAATAAATTACCAACAGGTGTGTGATGATTCTTAGTGGCTCGGTTATTCTTGTGTGTTATGTTCGGTGCTAGTGTTGAAGGATATTAGGAAAACAAATATTTTGTCACTGTAAAGATAATAGGCAATTTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02921	26630	30155	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002921s00040296.1	PF01344.20	Kelch_1	20	61	2.70E-06
Glyur002921s00040296.1	PF01344.20	Kelch_1	72	114	8.70E-10
Glyur002921s00040296.1	PF13418.1	Kelch_4	124	165	3.50E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.146
SRR1783600	control	12.227
SRR1783602	moderate drought stress	10.816
SRR1811619	moderate drought stress	10.766

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.450
DRR006520	Root Summer glycyrrhizin high producing strain	2.430
DRR006521	Root Winter glycyrrhizin high producing strain	21.302
DRR006522	Root Winter glycyrrhizin high producing strain	20.745
DRR006523	Root Summer glycyrrhizin low producing strain	9.399
DRR006524	Root Summer glycyrrhizin low producing strain	9.446
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.133
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.998

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	872.323
SRR2868004	Drought Stress (root)	588.599
SRR2967015	Control (root)	319.046

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.188
SRR9715740	Leaf	15.208
SRR9715741	Leaf	28.070
SRR9715739	Root	26.158
SRR9715742	Root	34.202
SRR9715743	Root	32.086

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	92.942
SRR8749028	MeJA induced 9h	426.037
SRR8749029	MeJA induced 9h	386.029
SRR8749030	Uninduced	66.006
SRR8749031	Uninduced	95.847
SRR8749032	Uninduced	106.468

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	119.728
SRR8400027	Control - Root	60.663