Gene detail

Gene detail information of Glyur002921s00040295

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G25450.1	2.00E-47	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	KEH38331.1	1.15E-99	2OG-Fe(II) oxygenase family oxidoreductase [Medicago truncatula]
Swissprot	tr\|Q9SKK4\|GSL_ARATH	2.00E-55	Probable 2-oxoacid dependent dioxygenase
trEMBL	tr\|A0A072V9P5\|A0A072V9P5_MEDTR	4.00E-100	2OG-Fe(II) oxygenase family oxidoreductase {ECO:0000313\|EMBL:KEH38331.1}

Sequence

Transcript Sequence

>Glyur002921s00040295.1
AATAAATCCAACTAGCTTCAATAATTTAGTATTGTCCTTGTCCTATATGCAGAGTATCTAGGGAAACAAACAAGGTTACCTTTTGTTTATTCACCTCGTGTGGATGGCAAACTGAAATGAAAACATTTTCCCATCTTCCTTCCATCTACATCTACTCCTCCTCTTCAATCCCTTTGTTTTGAACCCCATCATAGTTACTTTCATTACAAAATTAATGCACAGATAGCCTCTAAAGTCTAAACATGGTGGCCACAAGCACAAATGAGTTGGAAGGTGTAAGAGGGAATGTTTCATCAAGCTATGACAGGAAAAGTGAACTCAAGGCATTTGATGAGTCAAAGGTTGGTGTCCAAGGACTCATAGAAAATGGGGTCACAAAAGTTCCCCCTATGTTCTATTGTGGACAGTCTAATCTCAATGATGGGTCAGCTAGTGAATCAAATTCAAAGCTAAGTATCCCCACAATTGACCTCATAGGAATCCATGGTGATCCTGTTTTGAGAGATGAAGTTGTGAGAAAAATCCAACATGCATGTGAGAATTGGGGCTTCTTTCAGGTCATAAATCATGGGATCCCAACTCATGTTTTGGATGAGATGATCAAAGGGACATGCAGGTTTCACCAACAAGATCCCAAGGTGAGGAAAGAGCACTACACTCGTGATCTCAGCAAGAAAGTTGTTTATCTTTCCAATTTTACCCTTTATCAAGACCCATCTGCTGATTGGAGGGATACACTTGGATGTTTCTGGGCACCCCATCCACCCAAAGCTGAAGAACTGCCAGCAGTTTGTAGAAAGCTTTTGAGTAATGACAAGTTCATCAGTGTTCAGCACAGAGTCTTAGCAAAGGATATAGGCCCAAGAATTTCAGCTGCATCCATTTTCAGGCCACATGATCATTCACCCGAGCTTATGNCAAAAGTCATTGGTCCAATCAAGGAACTTTTATCTAAAGAGAATCCACCAATATACAGAGAAACTTCTTTTAAAGAGTACTTGGCATATCGTTTTGCAAATGGCATTGGATCTTCAGCACTGTTATCCTTCAAGTTGTGAGTTATGAATGAACAATTGCATGCAGNCTTGATCTTTATGGAATAGTGTTATGGTTTATCTTATTGTAGTGAACTTTGGGATGTGGATTGAAGAATTGAAAACTTAGCTGTATNTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02921	22676	26077	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002921s00040295.1	PF14226.1	DIOX_N	72	172	1.00E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	66.287
SRR1783600	control	66.407
SRR1783602	moderate drought stress	55.596
SRR1811619	moderate drought stress	56.934

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.069
DRR006520	Root Summer glycyrrhizin high producing strain	44.001
DRR006521	Root Winter glycyrrhizin high producing strain	20.524
DRR006522	Root Winter glycyrrhizin high producing strain	19.482
DRR006523	Root Summer glycyrrhizin low producing strain	36.992
DRR006524	Root Summer glycyrrhizin low producing strain	36.577
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.564
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.965

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	70.006
SRR2868004	Drought Stress (root)	62.230
SRR2967015	Control (root)	70.802

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.396
SRR9715740	Leaf	7.351
SRR9715741	Leaf	7.381
SRR9715739	Root	15.984
SRR9715742	Root	24.795
SRR9715743	Root	20.639

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.336
SRR8749028	MeJA induced 9h	5.170
SRR8749029	MeJA induced 9h	3.397
SRR8749030	Uninduced	1.864
SRR8749031	Uninduced	1.336
SRR8749032	Uninduced	1.380

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.885
SRR8400027	Control - Root	46.133