Gene detail information of Glyur002918s00034904 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17760.1 | 1.00E-81 | Eukaryotic aspartyl protease family protein |
| NR | XP_006590736.1 | 0 | PREDICTED: peroxidase [Glycine max] |
| Swissprot | tr|Q9LX20|ASPL1_ARATH | 5.00E-46 | Aspartic proteinase-like protein 1 (Precursor) |
| trEMBL | tr|I1LI47|I1LI47_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G08530.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02918 | 5240 | 10293 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002918s00034904.1 | PF14543.1 | TAXi_N | 111 | 246 | 5.50E-17 |
| Glyur002918s00034904.1 | PF14541.1 | TAXi_C | 285 | 407 | 1.40E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.217 |
| SRR1783600 | control | 7.490 |
| SRR1783602 | moderate drought stress | 6.112 |
| SRR1811619 | moderate drought stress | 6.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.605 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.519 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.321 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.728 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.644 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.127 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.903 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.753 |
| SRR2868004 | Drought Stress (root) | 22.373 |
| SRR2967015 | Control (root) | 29.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.265 |
| SRR9715740 | Leaf | 14.959 |
| SRR9715741 | Leaf | 29.178 |
| SRR9715739 | Root | 1.985 |
| SRR9715742 | Root | 6.703 |
| SRR9715743 | Root | 5.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.607 |
| SRR8749028 | MeJA induced 9h | 11.065 |
| SRR8749029 | MeJA induced 9h | 3.922 |
| SRR8749030 | Uninduced | 12.186 |
| SRR8749031 | Uninduced | 7.508 |
| SRR8749032 | Uninduced | 5.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.132 |
| SRR8400027 | Control - Root | 7.111 |