Gene detail information of Glyur002911s00030685 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67800.4 | 9.00E-154 | Copine (Calcium-dependent phospholipid-binding protein) family |
| NR | XP_004502384.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9SS90|RGLG1_ARATH | 0 | E3 ubiquitin-protein ligase RGLG1 |
| trEMBL | tr|G7J350|G7J350_MEDTR | 0 | E3 ubiquitin-protein ligase RGLG2-like protein {ECO:0000313|EMBL:AES72143.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02911 | 9088 | 15217 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002911s00030685.1 | PF07002.11 | Copine | 127 | 275 | 4.70E-53 |
| Glyur002911s00030685.5 | PF07002.11 | Copine | 35 | 144 | 5.40E-36 |
| Glyur002911s00030685.6 | PF07002.11 | Copine | 35 | 144 | 5.40E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.929 |
| SRR1783600 | control | 8.200 |
| SRR1783602 | moderate drought stress | 9.710 |
| SRR1811619 | moderate drought stress | 9.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.560 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.493 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.324 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.100 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.793 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.613 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.782 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 50.580 |
| SRR2868004 | Drought Stress (root) | 83.222 |
| SRR2967015 | Control (root) | 115.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.571 |
| SRR9715740 | Leaf | 8.571 |
| SRR9715741 | Leaf | 9.865 |
| SRR9715739 | Root | 28.750 |
| SRR9715742 | Root | 18.041 |
| SRR9715743 | Root | 21.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 65.564 |
| SRR8749028 | MeJA induced 9h | 208.470 |
| SRR8749029 | MeJA induced 9h | 138.390 |
| SRR8749030 | Uninduced | 78.957 |
| SRR8749031 | Uninduced | 84.203 |
| SRR8749032 | Uninduced | 112.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.855 |
| SRR8400027 | Control - Root | 42.652 |