Gene detail information of Glyur002910s00040631 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54200.1 | 1.00E-35 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_003521609.1 | 8.53E-117 | PREDICTED: uncharacterized protein LOC100811806 [Glycine max] |
| trEMBL | tr|I1JJY4|I1JJY4_SOYBN | 3.00E-117 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G00310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02910 | 14971 | 15549 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002910s00040631.1 | PF03168.8 | LEA_2 | 71 | 167 | 3.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.230 |
| SRR1783600 | control | 9.320 |
| SRR1783602 | moderate drought stress | 7.292 |
| SRR1811619 | moderate drought stress | 7.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.632 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.620 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.501 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.901 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.953 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.383 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.127 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.605 |
| SRR2868004 | Drought Stress (root) | 19.600 |
| SRR2967015 | Control (root) | 17.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.214 |
| SRR9715740 | Leaf | 9.594 |
| SRR9715741 | Leaf | 10.089 |
| SRR9715739 | Root | 5.489 |
| SRR9715742 | Root | 10.256 |
| SRR9715743 | Root | 8.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 39.914 |
| SRR8749028 | MeJA induced 9h | 25.600 |
| SRR8749029 | MeJA induced 9h | 34.673 |
| SRR8749030 | Uninduced | 51.059 |
| SRR8749031 | Uninduced | 31.012 |
| SRR8749032 | Uninduced | 17.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.884 |
| SRR8400027 | Control - Root | 13.396 |