Gene detail

Gene detail information of Glyur002907s00033935.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G58440.1	0	FAD/NAD(P)-binding oxidoreductase family protein
NR	XP_006606979.1	0	PREDICTED: squalene monooxygenase-like [Glycine max]
COG	YP_004346032.1	3.00E-100	Squalene monooxygenase [Fluviicola taffensis DSM 16823]
Swissprot	tr\|O48651\|ERG1_PANGI	0	Squalene monooxygenase
trEMBL	tr\|I1J3Z3\|I1J3Z3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA0041S00260.5}

Sequence

Transcript Sequence

>Glyur002907s00033935.2
CTTCCCCCGTTTCTGCAACCTCAAAGCTGGAGGTAAGGCTCACGGATTTCTAAATCACAAAGGAAAAGGCAAACCTTGTTCACATCTGTGGCCCTAAAATAAAATATGAAAGAGGCGCAGCTGTGGCTTTCAATGTTAGAGACAGAAGTTGGGGGCTAATAAATCCTGAGATTGTTCAAAAGCTGGCTGAAAAAGAAGGAATCTCTCTTGGTATTGGTTTTCTTAGTCATATACAGATTCTTGACAGCTCAAGACAGCGGCGTGGATCTCTGAATCTTGAAGACACAACTCTTTGCAAGCCTATGGAGAATGGTCGGCGCGATGGAAAAGGTAGCTTTGTGAGGCTTGAAGTTGTCACGNCTTCACTGGGATTTCTGACTAATTTTGAGGATGTGTATAAGTTGTGGGGTTTTGTGGCAAAGTTTCTCAACCCATCATTCATCAGGGAAGGTGGTCTTCCTATTGTTTAAGAAGGCTCTGAGACATGACATGGCACATGAAAGATTCTTTGTGAGAGGTTGCCAAAAGGGGCAGCGACCAAAAGTTGTAGGAAGAATGAATTGGTGATAATTTGTATGCTGCTAGATAAACATATAGTAATCTCTGCATCAGAGCCAGACAAGGATAGTGGNTGGATTTGTTAATTCATGTCTATTGTTCCTTACATTTTTCATTTCCTTTTTTTTTTGTTAATTCATGGCTTTAGATATTTGTTACATATTGGGAATGAGAAGAAGGGGATTTAGAAATCTGTGAGCCTTACCTCCAGCTTTGAGGTTGCAGAAATGGGGGAAGTGAGAAGAAGGGGATATAGGGATTTGGGGACCAAATTGNAAAAATGAAGATATTTAAAATTTAAAAAACCTTCATTTTAGTCCCNGGTTACGTGGCAATACACGTTGGCTGCCACATGTGAGCCTGTGTGTCAGAAAACGTGACANGTCAGCAACGTTAACGGAGTTGAGTAACGGAAGTGTGGTCAGTGGGCAATTTGACAGCGAGAGGGGAAGACCGAATAGGAAACAAGGAATCAAAGTAACGCGGGAGCTGCGTCCACTATCCAACACCCACGCGGCGCAAATTAGCGGGAAGCCTCTGTGTGTGTGTGTATTTTTCAATCCTTGTTCAGATACAGCTAATGTGATGCGTCCATGCCCGTAGTAAACACCGAACCTCGCATTTCGCATGTCCTATAAAACGCGAACCCCTTCCCTCTCAAATTCTGTTATAGCAACCGAAATTGTTCAAAGTTTCTCTGCCAGCGTGGCAGAGAGAGAAACTATAGAGCGAGAGAGCGAACACCTCCTCCTTCGTCGCCACCGCCACCGTCTGTTTTTTCCGGCGAGGTTCATCTGATTCGCATTCCGTAATGGTGGATCCGTNCGTTCTCGGTTGGATTCTAAGCTCCGTTCTGAGCCTCTTTGCTCTGTACAGTTTGGTTTTCGCCGGAAAGGGAAGTCGTGCTTCACCGGAGAAGGCGACTCAGTTCGAGGATAGCGTAACTACCACCGCTGGAGAATGCAGATCGGAAAAACTTAACGGCGACGCTGACATCATCATTGTCGGAGCCGGTGTTGCCGGCTCCGCTCTGGCTCACACTCTCGGCAAGGAGGGACGTCGAGTGCTTGTCATCGAAAGAGATCTGAGTGAGCCAGACCGAATTGTTGGAGAGCTGCTACAACCTGGGGGCTATCTCAAATTAATTGAACTGGGACTTGAAGATTGTGTGGAGAATATTGATGCTCAGCAAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAACATACTCGTCTCTCTTATCCCTTGGAGAAGTTTCACTCAGATGTCTCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGCGGGAGAAAGCTGCCTCCCTTCCCAATGTGCGACTGGAGCAAGGGACAGTAACTTCCCTACTTGAAGAGAAGGGAACAATCAAAGGTGTGCAATACAAGACCAAAGATGGTCAGGAATCGACATCATATGCTCCTCTTACCATTGTTTGTGATGGCTGTTTCTCAAACTTACGGCGTTCTCTTTGTAATCCTAAGGTAGATATTCCCTCTTGTTTTGTTGGCTTAGTTTTAGAGAACTGTGAACTTCCTTGTGCCAATCATGGCCACGTCATACTCGGAGATCCTTCACCAGTTCTGTTCTATCCTATAAGTAGCACAGAGGTTCGTTGTCTGGTCGATGTACCTGGTCAGAAGGTTCCTTCTATTTCAAATGGTGATATGGCAAAGTATTTGAAGAACACGGTGGCTCCGCAGGTACCCCCTGAGCTTTATGATGCCTTCATAGCCGCAGTGGACAAGGGCAACATAAGGACAATGCCAAACAGAAGCATGCCAGCAGATCCTCATCCTACGCCTGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGGCATCCACTAACAGGGGGTGGAATGACTGTAGCATTGTCTGATATTGTGGTGCTGAGGAATCTTCTCAGGCCTTTGCGTGACCTGAACGATGCACCCACACTTTGCAAATACCTTGAATCCTTTTATACCTTGCGTAAGCCTGTGGCAGCCACTATAAATACGTTGGCAGGAGCCCTTTACAGGGTTTTTTGTGCNTCCCCTGATCAAGCTAGGAAGGAAATGCGGCAAGCTTGCTTCGATTATCTGAGCCTTGGAGGCCTATTCTCGGAAGGACCAGTCTCTTTACTNTCAGGATTAAACCCTCGCCCCTTGAGCTTGGTTCTCCATTTCTTTGCTGTTGCAGTATTTGGTGTTGGCCGTTTACTATTACCATTTCCTTCACCTAAGCGGATATGGATGGGAGCCCGATTACTCTCTGGTGCATCTGCAATCATCTTGCCTATAGTTAAGGCTGAAGGAATCCGCCAGATGTTTTTCCCTGCCACTGTTCCAGCTTATTACAGAGCCCCCCCGGCTTCATAAAAGTGCAAATGCATTTTGGAAAATCGAGTTGCTCTCAAGATGAGCTAGCTTTATCCTCCATTCTTCGGAATTTGATGGAAGGTCGATCCTCATATATCTGTAAACATTTTGGCGTTTTTAGTGTGTATTCTTCCTTTTTTTTTTAAAAAAAAACTTTTTTAGTGTGTATTCTTTGTAGTCAGTAATGCATGTATGATTTTTGTCCCCCTTTTTGGTGTTTTCTAAATTAAATCCATTATCTTAAACCAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02907	3093	9285	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00511	SQLE, ERG1	EC:1.14.14.17	Steroid biosynthesis	map00100
			Steroid biosynthesis	map00100
			Sesquiterpenoid and triterpenoid biosynthesis	map00909
			Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0004506 squalene monooxygenase activity

GO:0016491 oxidoreductase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002907s00033935.2	PF13450.1	NAD_binding_8	64	90	2.30E-05
Glyur002907s00033935.2	PF08491.5	SE	211	483	1.50E-124

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	80.402
SRR1783600	control	80.807
SRR1783602	moderate drought stress	25.442
SRR1811619	moderate drought stress	25.776

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.795
DRR006520	Root Summer glycyrrhizin high producing strain	48.262
DRR006521	Root Winter glycyrrhizin high producing strain	15.278
DRR006522	Root Winter glycyrrhizin high producing strain	15.266
DRR006523	Root Summer glycyrrhizin low producing strain	18.413
DRR006524	Root Summer glycyrrhizin low producing strain	18.333
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.355
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.464

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.673
SRR2868004	Drought Stress (root)	34.330
SRR2967015	Control (root)	38.352

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.786
SRR9715740	Leaf	9.568
SRR9715741	Leaf	12.051
SRR9715739	Root	90.732
SRR9715742	Root	96.000
SRR9715743	Root	96.144

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	111.229
SRR8749028	MeJA induced 9h	76.876
SRR8749029	MeJA induced 9h	167.740
SRR8749030	Uninduced	182.820
SRR8749031	Uninduced	69.047
SRR8749032	Uninduced	96.212

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	64.716
SRR8400027	Control - Root	103.631