Gene detail information of Glyur002896s00038176 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35500.1 | 1.00E-124 | shikimate kinase like 2 |
| NR | XP_003517670.1 | 0 | PREDICTED: probable inactive shikimate kinase like 2, chloroplastic-like [Glycine max] |
| COG | YP_007161771.1 | 1.00E-10 | shikimate kinase [Cyanobacterium aponinum PCC 10605] |
| Swissprot | tr|O82290|SKL2_ARATH | 7.00E-156 | Probable inactive shikimate kinase like 2, chloroplastic (Precursor) |
| trEMBL | tr|K7K189|K7K189_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G01890.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02896 | 28514 | 31794 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002896s00038176.1 | PF01202.17 | SKI | 192 | 279 | 3.10E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.877 |
| SRR1783600 | control | 5.958 |
| SRR1783602 | moderate drought stress | 5.643 |
| SRR1811619 | moderate drought stress | 5.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.999 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.968 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.321 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.107 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.474 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.453 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.796 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 46.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.607 |
| SRR2868004 | Drought Stress (root) | 3.870 |
| SRR2967015 | Control (root) | 4.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.578 |
| SRR9715740 | Leaf | 16.446 |
| SRR9715741 | Leaf | 10.398 |
| SRR9715739 | Root | 0.702 |
| SRR9715742 | Root | 0.788 |
| SRR9715743 | Root | 1.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.311 |
| SRR8749028 | MeJA induced 9h | 6.769 |
| SRR8749029 | MeJA induced 9h | 3.728 |
| SRR8749030 | Uninduced | 5.700 |
| SRR8749031 | Uninduced | 4.111 |
| SRR8749032 | Uninduced | 6.849 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.071 |
| SRR8400027 | Control - Root | 2.967 |