Gene detail

Gene detail information of Glyur002892s00044213.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31500.1	1.00E-119	cytochrome P450, family 83, subfamily B, polypeptide 1
NR	XP_003516815.1	0	PREDICTED: cytochrome P450 83B1-like [Glycine max]
COG	YP_004303682.1	2.00E-35	cytochrome P450 [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|O65782\|C83B1_ARATH	5.00E-149	Cytochrome P450 83B1
trEMBL	tr\|I1J6H2\|I1J6H2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G17330.1}

Sequence

Transcript Sequence

>Glyur002892s00044213.1
GCTAGCTAGCAGATAATGGTACAAGTATTAAAGTTACTATCCACATGAGATGGATCTGAGCATGTGTATTTTTTAAAATATGAGTATGGGGACAAATGCTACAATATCATATCCACATCATATCCAAACTCTTATCATCCATTCATCCCTGGTGTACTCAATATCCACATCATATCCGAACACTATTATCATCCCTAGTGTTAGCAGATGAACTCTATATATATATGAGATTAGTATATTACAAGAGCTCTAAATTCATCATGGACGAAAGCATGTTATCACTTGTTCTTGTAGCTTTTCCTCTCTTGCTATTGTTCATCTTCCNAAAACACAAAACATCAAAGAAGAAGCCAAACCTTCCACCAGGCCCCAGAGGCCTTCCCTTCATTGGCAATCTACACCAACTCAATAGTTCATCTCTTCATCTGAACCTGTACGAGCTCTCAAAGAAACATGGCTCCTTGTTTTCCCTTAAACTCGGTTCAAGGCAAGCAATCGTGGTTTCCTCAGCTGAAATGGCCAAAGAGGTAACAAAAACCCACGACGTCGACTTCTGTAGCCGACCCTCCTTCATAAGCCAAATGAAGTTCTCATACGATGGACTAGACATGATTTTTTCACCCTACAGAGATTACTGGAGACACACGAGGAAACTCTCCATCATCCATTTCCTTAGCCTCAAGCGTGTCTTAGCATTTTCCTCGGTTAGAAAATATGAGGTATGTCAAATGATCAAGAAGATAACCGAACACGCTTCTTGCTCCAACAAAGCTACCAACTTGCATGAGTTGCTGACGTGTCTCACTAGTACAATAGTTTGTAGGACCGCGTTTGGAAGAAGGTACGAGGAAGAAGGAATTGAGAAAAGCATGTTCCATGGGTTGTTTAGAGAGGCGTTGGAGTTGATAGTTTCCTTCTTTTATGAGGATTATTTCCCACTTTTTGGGGGAATTGTTGATAAATATTTCACTGGGATGACGGGTCGACTTGAGAAGATGTTCAAGGTGCTTGATGGGTTTTTTCAGGGTATTATTGATGAACACCTTGATCCTGAAAGGAGGAAAAAACTACCTGCAGATCATGAAGAGGATGTAATTGATGCCTTGCTTCAGTTGAAGAATGATCCTTCCTTCTCCATGGATCTCACTCCTGATCACATCAAACCTCTCATCATGAATATGATAGTGGCAGGGTCTGATACAAGTGCATCTGTAATAGTTTGGGCCATGACAGCACTAATGAAGAACCCTCAAGTAATGCAGAAAGCACAAGAAGAGATCAAAAACATGTTCGGAAGGAATAAAGGGAAAGACTTCATAGAGGAACCCGATGTCCAAAAGCTCCCTTATTTGAAGGCAGTGATAAAAGAAACAATGAGAATGTACCCGCCACTACCACTCCTCATAACAAGAGAAACGAGGAACAAGTGTCACATAGCAGGGTACGNGGTTCCAGAGANGACANTGGTGTATGTGAATGCTTGGGCAGTACATAGAGACCCTGAGAAATGGAAGGACCCNGAAGAGTTNTGTCCTGAGAGGTTCCTAGAGANTGATATAGATTTCAGGGGACATGATTTTGAGCTGATTCCATTTGGTACAGGAAGAAGGATTTGCCCCGGGATACACATGGGGGTTGCTACTGTGGAGCTTGTTCTAGCTAATCTTCTCTATTCGTTTGATTGGGAAATGCCTCAAGGGANAAAGAGGGAAGACNTTGACACTGAAGTGCTTCCTGGACTTATCCAACACAAGAAACACCCTCTCTGTCTTGTTGCTAAGAAGCGGTTTAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02892	10889	13715	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP83B1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002892s00044213.1	PF00067.17	p450	89	553	5.50E-103

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.685
SRR1783600	control	1.774
SRR1783602	moderate drought stress	20.352
SRR1811619	moderate drought stress	21.132

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.244
DRR006520	Root Summer glycyrrhizin high producing strain	2.234
DRR006521	Root Winter glycyrrhizin high producing strain	6.288
DRR006522	Root Winter glycyrrhizin high producing strain	6.936
DRR006523	Root Summer glycyrrhizin low producing strain	1.002
DRR006524	Root Summer glycyrrhizin low producing strain	1.108
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.489
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.460

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.179
SRR2868004	Drought Stress (root)	3.059
SRR2967015	Control (root)	3.081

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.273
SRR9715740	Leaf	25.739
SRR9715741	Leaf	79.484
SRR9715739	Root	1.924
SRR9715742	Root	8.125
SRR9715743	Root	7.640

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.118
SRR8749028	MeJA induced 9h	0.785
SRR8749029	MeJA induced 9h	0.135
SRR8749030	Uninduced	0.175
SRR8749031	Uninduced	0.011
SRR8749032	Uninduced	0.078

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.638
SRR8400027	Control - Root	5.143