Gene detail

Gene detail information of Glyur002890s00036777

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G53140.1	Dynamin related protein 5A
NR	KEH19530.1	dynamin 5A-like protein [Medicago truncatula]
Swissprot	tr\|F4HPR5\|DRP5A_ARATH	Dynamin-related protein 5A
trEMBL	tr\|A0A072U158\|A0A072U158_MEDTR	Dynamin 5A-like protein {ECO:0000313\|EMBL:KEH19530.1}

Sequence

Transcript Sequence

>Glyur002890s00036777.1
ATGTCGTCATCCACCAGCACTCCCACGAAAACCCCATCGACTGAGAAATCATCATCCGCCACTAGGAGGAAGCAGCAGCACATGGATTCCTCCAAGTCGAGGTTCGAGGCCTACAACCGCCTCCAGTCGGCCGCCGTGGCCTTCGGCGAGTCACTCCCAATCCCCGAAATCGTCGCCGTTGGTGGCCAGTCTGACGGAAAGAGCTCCCTCCTCGAAGCCCTCCTCGGCTTCCGCTTCAATGTCCGCGAGGTCGAGATGGGCACTCGCCGCCCCCTCATCCTCCAAATGCTCCACGACCCCTCCGCTCTCGAACCTNGCTGCCGCTTCCAGGAGGAGGATTCAGAAGAGTACGGGAGTCCNGTGGTTTTGGCATCTACCATTGCCGACATTATAAAGTCACGAACGGAGGCACTTTTGAAGAAAACCAAGACAGCGGTTTCTCCTAAGCCAATTGTACTGAAGGCTGAGTACGCCCATTGTCCTAACCTTACCATTATCGACACCCCCGGGTTTGTTCTCAAGGCGAAGAAGGGTGAACCGGAGAACACGCCTGAGGAAATTCTTTCGATGGTGAAGTCACTGGCTGCCCCTCCCCATCGACTACTCTTGTTCCTTCAGCAGAGCAGCGTGGAGTGGTGCTCCTCCTTGTGGTTGGATTCCATTCGCGAAATTGACCCCGCGTTTCGNCGCACAATCATTGTTGTCTCCAAATTCGATAACCGTCTCAAGGAATTTAGTGACCGGTGGGAAGTTGATCGCTATTTGAGTGCAAGTGGTTACCTTGGAGATAACACTCGCCCCTTTTTTGTGGCCTTGCCTAAGGATAGGGGCAATGTTTCAAATGAAGAGTTCCGCAGGCAGATTTCTATGGTGGACTCTGAGGTTATTCATCATCTCCGCGAGGGTGTTAAGGGAGGTTATGATGAAGAAAAGTTTAAGTCCTATATTGGATTTGGCCGTCTGAGGGATTATTTGGAGTCTGAGCTTCAGAAGAAATACAAAGAAGCTGCGCCAGCAACTCTTGCATTGCTTGAGCAACGNTGTAATGAAGTCACTTCTGAACTTGCTGGGTTGGAATCAAAAATACAGGCCACTTCAGATATTTCTCATCTAAGGAAATTCGCAATGCTGTATGCAGCTTCTATCAGCAACCATGTGGGTGACTTGATTGATGGTGCAGCGGATCCTTCCCCTGAGCAGTGGGGGAAAACAACAGTGGAAGAGCGGTCTCAAAGTGGTATTGGGGTTTGGCCTGGTGTCATCACGGATGTAAATCCCCCCAATGCCACTCTTCGTCTTTATGGAGGGGCTGCATTTGAGAGGGTGATGCATGAATTTCGTTGTGCTGCATATTCCATTGAATGCCCCCCAGTGTCGAGGGAAAANGTCGCAAATATATTACTTGCCCATGCTGGCCGAGGTGGGGCAAGAGGACTAACAGAGGCTGCTGCAGAGATTGCACGTGCTGCTGCTAGATCATGGCTTGCTCCTCTTCTTGATACTGCATGTGATCGTCTTGCTTTTGTCTTGGGAAGTTTATTTGATTTGGCTCTAGAAAGAAACCGCAATGGGATAAAAACGGGAAACATGGATGGCTATGTGGGTTTTCATGCTGCTTTGAGGGGTGCTTATAGTCGCTTTATAAAGGATCTTGCTAAGCACTGCAAGCAGCTTGTCAGGCACCACCTTGATTCAGTTACCAGTCCATACTCACAGGTCTGCTACTTCAATGACTTCCAACCATGTGCTGGCCTAAATGCTTCCACTTTCAACAACAAACTCAACCAGGGTTCAGCCTCTTCNTTTCTACTTGAGCTGAGTGATACAAATTCAGCTTCCCATGATGATGTAANGAGGGATCAGGAAAATATACCCCCAGAAAAGAACGCACAGGAAACAACACCAGGTAAAGAAAAAGCTAGAGATGCTTTGCGAGAAAGCCACATTACTATCCCTGAGACCCCATCTCCTGATCAACCAGGTGATCCAGTATATGGGGTGGCTAAAAAGGAGCTTGGGATTTGCAATGACAATGGACCAAGAAAGAGAGTGTCCAGAATGGCAGGGAATGGCAAGAATTCTGACTATATGAGACTGCAAAATGGTGGCATTTTATTTGGAAATGGGGAGAGATCGGGTTCAACATACTCAGAAATCTGTTTATCAGCTGCTAANCATTTTGCACGTATACGTGAAGTTCTTGTTGAAAGAGGCGTGACATCAACATTAAACTCTGGATTCCTAACCCCTTGCCGAGATCGTCTTGTCGTGGCTATTGGGTTAGATTTATTTGCCGTGAACGATGAGAAATTCATGGACATGTTTGTTGCTCCTGGTGCCATAGATGTGCTTCAAAATGAACGAGAGTCTCTTATGAAGCGCCAGAAGATACTCCATTCTTGCTTGAATGAGTTCAGAAACGTTGCTAGGGCTCTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02890	1780	7765	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002890s00036777.1	PF00350.18	Dynamin_N	57	237	7.60E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.706
SRR1783600	control	1.679
SRR1783602	moderate drought stress	0.892
SRR1811619	moderate drought stress	0.879

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.415
DRR006520	Root Summer glycyrrhizin high producing strain	1.499
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.445
DRR006524	Root Summer glycyrrhizin low producing strain	0.452
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.310
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.327

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.002
SRR2868004	Drought Stress (root)	2.453
SRR2967015	Control (root)	3.829

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.134
SRR9715740	Leaf	0.037
SRR9715741	Leaf	0.350
SRR9715739	Root	0.567
SRR9715742	Root	0.655
SRR9715743	Root	0.802

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.497
SRR8749028	MeJA induced 9h	4.305
SRR8749029	MeJA induced 9h	1.775
SRR8749030	Uninduced	0.974
SRR8749031	Uninduced	1.125
SRR8749032	Uninduced	0.326

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.855
SRR8400027	Control - Root	3.060