Gene detail information of Glyur002885s00046008 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16050.1 | 3.00E-90 | Cysteine/Histidine-rich C1 domain family protein |
| NR | AFK36976.1 | 1.38E-131 | unknown [Lotus japonicus] |
| trEMBL | tr|I3S9N4|I3S9N4_LOTJA | 5.00E-132 | Uncharacterized protein {ECO:0000313|EMBL:AFK36976.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02885 | 18721 | 19449 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002885s00046008.1 | PF00569.12 | ZZ | 31 | 59 | 6.30E-05 |
| Glyur002885s00046008.1 | PF03107.11 | C1_2 | 92 | 118 | 0.00014 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.028 |
| SRR1783600 | control | 5.935 |
| SRR1783602 | moderate drought stress | 6.587 |
| SRR1811619 | moderate drought stress | 6.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.068 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.592 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.330 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.729 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.734 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.667 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.835 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.843 |
| SRR2868004 | Drought Stress (root) | 23.511 |
| SRR2967015 | Control (root) | 25.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.747 |
| SRR9715740 | Leaf | 1.791 |
| SRR9715741 | Leaf | 2.164 |
| SRR9715739 | Root | 4.552 |
| SRR9715742 | Root | 6.868 |
| SRR9715743 | Root | 7.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.890 |
| SRR8400027 | Control - Root | 5.138 |