Gene detail information of Glyur002883s00039141 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45680.1 | 3.00E-48 | TCP family transcription factor |
| NR | XP_004510891.1 | 4.91E-168 | PREDICTED: transcription factor TCP9-like [Cicer arietinum] |
| Swissprot | tr|O64647|TCP9_ARATH | 2.00E-84 | Transcription factor TCP9 |
| trEMBL | tr|I1JKG8|I1JKG8_SOYBN | 8.00E-157 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G02090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02883 | 16195 | 17226 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002883s00039141.1 | PF03634.8 | TCP | 70 | 174 | 7.70E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.071 |
| SRR1783600 | control | 10.895 |
| SRR1783602 | moderate drought stress | 16.205 |
| SRR1811619 | moderate drought stress | 16.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.077 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.828 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.853 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.919 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.742 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 34.646 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.143 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.790 |
| SRR2868004 | Drought Stress (root) | 36.318 |
| SRR2967015 | Control (root) | 37.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.404 |
| SRR9715740 | Leaf | 31.548 |
| SRR9715741 | Leaf | 33.632 |
| SRR9715739 | Root | 28.852 |
| SRR9715742 | Root | 40.560 |
| SRR9715743 | Root | 37.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.681 |
| SRR8749028 | MeJA induced 9h | 6.479 |
| SRR8749029 | MeJA induced 9h | 13.622 |
| SRR8749030 | Uninduced | 5.187 |
| SRR8749031 | Uninduced | 2.279 |
| SRR8749032 | Uninduced | 10.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.024 |
| SRR8400027 | Control - Root | 10.773 |