Gene detail

Database	Orthologs	E value	Annotation
TAIR	AT5G13870.1	5.00E-146	xyloglucan endotransglucosylase/hydrolase 5
NR	XP_003624550.1	0	Xyloglucan endotransglucosylase [Medicago truncatula]
COG	YP_005432194.1	3.00E-13	putative beta-glucanase [Selenomonas ruminantium subsp. lactilytica TAM6421]
Swissprot	tr\|Q8LNZ5\|XTHB_PHAAN	0	Probable xyloglucan endotransglucosylase/hydrolase protein B (Precursor)
trEMBL	tr\|Q2HRU5\|Q2HRU5_MEDTR	0	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}

Transcript Sequence

Protein Sequence

Scaffold	Start	End	Strand
Scaffold02881	28243	29850	+

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH16

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006073 cellular glucan metabolic process

cellular_component

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762 xyloglucan:xyloglucosyl transferase activity

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002881s00043902.1	PF00722.16	Glyco_hydro_16	28	209	8.50E-61
Glyur002881s00043902.1	PF06955.7	XET_C	233	283	1.40E-21

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.779
DRR006520	Root Summer glycyrrhizin high producing strain	28.910
DRR006521	Root Winter glycyrrhizin high producing strain	1.082
DRR006522	Root Winter glycyrrhizin high producing strain	0.554
DRR006523	Root Summer glycyrrhizin low producing strain	15.626
DRR006524	Root Summer glycyrrhizin low producing strain	15.556
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.751
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.114

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.913
SRR8400027	Control - Root	48.709