Gene detail information of Glyur002879s00039185 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23160.1 | 1.00E-68 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 |
| NR | ABD32333.1 | 2.26E-117 | polyprotein-like, putative [Medicago truncatula] |
| Swissprot | tr|P10978|POLX_TOBAC | 2.00E-41 | Endonuclease |
| trEMBL | tr|Q2HU08|Q2HU08_MEDTR | 8.00E-118 | Polyprotein-like, putative {ECO:0000313|EMBL:ABD32333.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02879 | 19728 | 25023 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002879s00039185.1 | PF07727.9 | RVT_2 | 284 | 395 | 1.30E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.013 |
| SRR1811619 | moderate drought stress | 0.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.578 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.888 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.792 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.836 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.490 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.177 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.045 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.956 |
| SRR2868004 | Drought Stress (root) | 6.215 |
| SRR2967015 | Control (root) | 4.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.883 |
| SRR8749028 | MeJA induced 9h | 5.701 |
| SRR8749029 | MeJA induced 9h | 3.914 |
| SRR8749030 | Uninduced | 5.715 |
| SRR8749031 | Uninduced | 6.249 |
| SRR8749032 | Uninduced | 7.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |