Gene detail

Gene detail information of Glyur002875s00044415.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77760.1	0	nitrate reductase 1
NR	KHN09170.1	0	Inducible nitrate reductase [NADH] 2 [Glycine soja]
COG	YP_001545630.1	3.00E-52	sulfite oxidase [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|P39870\|NIA2_SOYBN	0	Inducible nitrate reductase [NADH] 2
trEMBL	tr\|Q9SYR0\|Q9SYR0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G11430.1} (Fragment)

Sequence

Transcript Sequence

>Glyur002875s00044415.1
ATGGCGGCTTATGTAGACAACCGTCCTTATACTAAAGGCCTCGATCAACACTGTGTCGTTCGCGCCTTCAAGACAAGCCCTGAGGTCATGCGTATCAATAAGTCACCCGAACCTCCAATATTACTACCGGATTCCTCAAGCGAAGATGAGGATCATGAGAATTTGAACGGCCTCATTCTAAAGGGAGCCACCGAAGTAGAACCGTCCATCTTCGACCCTCGTGATGAGGCAACCTCTGACCATTGGATCCAACGCAACGCCACCCTCGTGCGCCTCACGGGGAAGCACCCCTTCAACTCAGAGCCACCCCTCCCACGCCTCATGCACCATGGTTTCATTACCCCTGTTCCCCTCCACTACGTCCGCAACCATGGGGCCGTTCCCCGGGCCCATTGGGAAGATTGGACTATTGACATATTGGGCCTCGTCAAGCGCCCGNCCCGGTTCACGATGGACCAACTGGTCCATGACTTCCCCAGCCGTGAGTTCCCTGTCACGCTTGTTTGCGCTGGGAACCGCCGCAAGGAGCAGAACATGGTGAAACAGAGCATTGGTTTCAACTGGGGCCCTGGTGCCATCTCCACTTCGGTGTGGCGAGGTGTACCGTTGAGGAGCGTGCTCAAGCGGTGTGGGATCTATAGCCGCTCTAAGGGAGCCCTCCACGTGTGCTTTGAAGGTGCGGAGGAACTTCCAGGTGGCGGTGGGTCCAAATACGGAACCGGTGTCTTGAGGGAGGTTGCAATGGATCCCTCCCGCGACATCATCATCGCCTACATGCAAAACGGTGAGCCTTTGTCCCCCGATCACGGCTTCCCCGTGCGGATCATAATACCCGGTTTCATTGGAGGCCGCATGGTGAAATGGTTGAAGCGCATCATTGTCACCCCTTCCCATTCTGACAGTTATTACCACTACAACGATAACAGAGTATTCCCCTCCCATGTTGATGCTGAGCTTGCCAATGCAGAAGCATGGTGGTACAAGCCAGAGTATATTATCAATGAGCTGAACATAAACTCAGTCATAACGACACCGGGCCATGATGAGATACTTCCAATCAATTCATGGACTACTCAGAGGCCTTATCTACTCAAAGGCTACGCATATTCCGGGGGTGGGAGAAAGGTGACACGTGTTGAGGTGACAATGGACGGTGGTGAAACGTGGCAATTATGCACGTTGGACCATTCTGAGAAACCCAACAAATATGGCAAGTACTGGTGTTGGTGCTTTTGGTCCTTGGATGTAGAGGTGTTGGACTTGCTTGGAGCCAAGGAAATTGCAGTGCGCGCTTGGGACGAGGCCCTCAACACCCAGCCTGAGAAGCTCATTTGGAATGTTATGGGCATGATGAACAACTGTTGGTTCAAAGTGAAAACCAATGTGTGCAAGCCCCATAAGGGTGAAATTGGCATAGTGTTCGAACACCCGACCCAACCGGGCAACCAATCTGGTGGTTGGATGGCAAAAGAAAGATACTTGGAGAAATCATCAGAGAGTAACCCAACCCTCAAGAAGAGCATCTCCTCACCGTTCATGAACACTAGCTCAAAAACATACACCATGTCTGAAGTCAGAAAGCATAATAATCTCGATTCGGCTTGGATCGTTGTCCATGGCCACGTCTACGACTGCACCCGCTTCATCAAAGACCACCCTGGAGGTGCCGACAGCATCCTCATCAACGCCGGCACCGACTGTACGGAGGAGTTCGAAGCCATCCACTCCGACAAAGCCAAGAAAATGATCGAGGAGTACCGAATTGGCGAGCTCTTGACCACCGGCTACACCTCCGACTCGTCGCCGAATAACTCGATGCACGGCAATTCTGACACCACTCATTTGCCCCCAATCAAGGAAGTTACACCATTGCGTAGTGTTGCTTTAAACCCGCATGAGAGAATCCCATGCAAGCTTTTCTCCAAAACGTCTATCTCTCGCGATGTTAGGCTCTTTCGTTTTGCGTTGCCTTCTGAAGACCAACTCTTGGGTTTGCCGGTGGGGAAACACATATTCTTATGCACCACAATTGATGAGAAGCTATGCATGCGAGCATACACTCCAACAAGCAGTGTGGATGAAGTGGGGTACTTCGATCTAGTAGTCAAGGTTTACTTCAAAGGGGTGCACCCAAAGTTCCCCAATGGTGGCCTCATGTCTCAACACTTAGAATCACTACCTATTGGATCAATATTGGACNTAAAAGGTCCACTAGGCCACATAGAGTACACTGGTAAGGGCAACTTTCTGGTTCATGGAAAACATAAGTTTGCAAAGAGGCTAGCCATGTTGGCTGGTGGGACTGGGATAACACCCATTTACCAAGTGGTCCAGTCAATTTTGAAAGACCCAGAGGATCACACCGAGATGCATGTTGTATATGCGAACCGGACTGAGGATGATATATTGCTAAGGGAAGAGCTGGATGGATGGGCTGAGAAGCATGAACGGTTCAAGGTTTGGTACGTGGTACAAGAAAGCATAAGAGAAGGGTGGGAATATAGTGTGGGGTTCATCACGGAAAGTATCTTGAAGGAGCATATTCCACAAGCATCACATGATACGTTAGCATGGGCATGTGGGCCCCCACCCATGGTTCAATTTGCAGTGCAACCCAATTTGGAGAAGCTGGGCTATGACATCAAGAACAACTTGCTATTGTTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02875	14162	18229	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10534	NR	EC:1.7.1.1 1.7.1.2 1.7.1.3	Nitrogen metabolism	map00910

Gene Ontology

biological_process

GO:0006809 nitric oxide biosynthetic process

GO:0042128 nitrate assimilation

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0020037 heme binding

GO:0030151 molybdenum ion binding

GO:0043546 molybdopterin cofactor binding

GO:0050464 nitrate reductase (NADPH) activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002875s00044415.1	PF00174.14	Oxidored_molyb	122	304	4.20E-50
Glyur002875s00044415.1	PF03404.11	Mo-co_dimer	330	462	4.70E-54
Glyur002875s00044415.1	PF00173.23	Cyt-b5	519	591	1.50E-28
Glyur002875s00044415.1	PF00970.19	FAD_binding_6	637	743	1.90E-32
Glyur002875s00044415.1	PF00175.16	NAD_binding_1	763	870	8.50E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.383
SRR1783600	control	1.386
SRR1783602	moderate drought stress	6.692
SRR1811619	moderate drought stress	6.945

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.689
DRR006520	Root Summer glycyrrhizin high producing strain	0.610
DRR006521	Root Winter glycyrrhizin high producing strain	0.499
DRR006522	Root Winter glycyrrhizin high producing strain	0.525
DRR006523	Root Summer glycyrrhizin low producing strain	2.080
DRR006524	Root Summer glycyrrhizin low producing strain	2.097
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	64.691
SRR2868004	Drought Stress (root)	22.526
SRR2967015	Control (root)	18.538

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.751
SRR9715740	Leaf	2.432
SRR9715741	Leaf	1.240
SRR9715739	Root	5.471
SRR9715742	Root	7.715
SRR9715743	Root	6.057

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.328
SRR8749028	MeJA induced 9h	71.322
SRR8749029	MeJA induced 9h	63.288
SRR8749030	Uninduced	10.320
SRR8749031	Uninduced	30.856
SRR8749032	Uninduced	34.627

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.135
SRR8400027	Control - Root	17.373