Gene detail

Gene detail information of Glyur002873s00043368

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05580.1	6.00E-180	fatty acid desaturase 8
NR	KHN10400.1	0	Omega-3 fatty acid desaturase, chloroplastic [Glycine soja]
COG	YP_007092097.1	2.00E-131	Delta-15 acyl-phospholipid desaturase [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|P48619\|FAD3C_RICCO	0	Omega-3 fatty acid desaturase, chloroplastic (Precursor)
trEMBL	tr\|C6T7L5\|C6T7L5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G07570.1}

Sequence

Transcript Sequence

>Glyur002873s00043368.1
CCACGGCCACAATATGAACAACAAGGACATGCCCTAACCCTTTGCCACTTTCCTTCTCCCTTGAATTGAACACCCCAAAAATAAAACAAAAAACAAAAAACCCTCTGGCTACCCTTTGTTTAAAGCTAAGATTTTTCTGTCAGATTTGAGATGCAAATTAGAGCACAAATGTGTGGCTATTGTTGAAACACACACTACACACACAAGTGCCTACCTAGTTTTATTTATACCTCAAGTTTATTTTAGTGTTTTCTTTTTTTGAGCTAGAACTAGAATTTTTGCTTCATTCAACTTCGATCCACCCCTCTAATTTTGGTTCACATATTTGCCCCTTCTCTCTCTCTCTCTCTCTCTCTCTAACTTTACCTCTGTGGTCTCCGAGGGACTAGGAAGTAGTCAAGAAGAAGAAGAAGAACCAATCATTCAACCAAACAACCAAATCTTACCCCTGAAACCTAAAAAGCTCTCTCTTTTATCATCACCACCAATGACAACATGGGTTTTATCAGAATGTGGCTTTAGGCCTCTTCNTCCATTATGTCCTCGACCCAGAACAGGAACCATTTCTTCTTCCTCAAAGGCTAGATTTTTGAACACAAAAAACAATGGAGTGGTGCGAACAGATCTGGGGTTCAATTGTGGTGGCCTTATTAGGGAAAAGAGAAGGTTGGAAGTACTTAGAGTGAGTGCTCCTTTGAGGGTTGGCACTGCTGAAGGAGATAAGGAAGAGAGAATCAATGGGGTGGTTGCACAGGAATTTGACCCTGGTGCACCACCACCATTCACATTGGCTGAGATAAGAGCAGCAATTCCTAAGCACTGTTGGGTGAAGAACCCATGGAGGTCCATGAGCTATGTGGTGAGGGATGTCATTGTGGTTCTTGGGTTGGCTGTTGTTGCTGCTTATGTCAATAGCTGGTTGGTTTGGCCTCTTTATTGGGCTGCTCAAGGGACCATGTTCTGGGCTCTCTTTGTTCTTGGTCATGATTGTGGCCATGGGAGCTTCTCAAACAATCCCAAGCTGAACAGTGTTGTAGGTCACTTGCTGCATTCTTCAATCCTAGTACCATATCATGGATGGAGAATCAGTCACAGAACACACCATCAAAACCATGGCCATGTTGAAAATGATGAATCTTGGCACCCATTGCCTGAGAAAATCTTCAAGAGCTTGGACAATGTAACGCGTGTTTTGAGATTCACAGTACCTTTTCCAATGCTTGCCTATCCTATCTACCTTTGGAGTAGGAGTCCTGGGAAGACTGGTTCTCACTTTCATCCAAACAGTGACTTGTTTGTCCCCAGTGAAAGAAAAGATGTTGTGACATCAACAATTTGTTGGTCTGCTATGGCTGCTTTGCTTGTAGTTTTAGGTTTTGTGATGGGTCCAGTTCAATTGCTTAAGCTTTATGGCATTCCCTACTTGATTTTCGTTATGTGGTTGGATATGGTTACTTATTTGCACCACCATGGCCATGAAGACAAATTGCCATGGTATCGTGGACAGGAATGGAGCTACCTTAGGGGTGGGCTTACAACCCTTGATCGTGACTATGGATGGATCAATAACATCCACCATGACATTGGGACCCATGTCATCCATCACCTCTTTCCTCAAATCCCACACTACCACTTAATAGAAGCGACTGAGGCAGNTAAGCCAGTTCTTGGCAAATATTACCGGGAGCCAAAGAAATCAACCCCTCTTCCATTTCACCTCATTGGGGATTTGATAAGAAGCATGAAGAAAGACCATTTTGTTAGTGACACTGGGGATATTGTGTACTACCAAACAGACCCTAAGCTTAGTGNCTCTTCTACATCAAAGTAAAACCTTTGATTTCTTTTTTTCTTTTTCCTTTTTCTTCTCTCTTGAAGACAAGAAGATAGGCCACACAAATTATCTAGCATGACACAATTTCTTAACTTTTGAAACATTGTGTCTGACCTTTGTTANTCTGATTGAGTCCTAAACTATTAAAGAGTTGAATTCCTCATAAGTAAAGGGAATGGAATGGATGATGCCATTCAAATTGGGTTGTAACTGGAAGCATGAGCAGAAGGGTTTCTTCATTGAAGAGCATAAAAGTCTGTAAATTTTGTTTATTCTTGATGAAGGAAGTCATAACTTCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02873	12883	16495	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006629 lipid metabolic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002873s00043368.1	PF11960.3	DUF3474	1	135	2.70E-48
Glyur002873s00043368.1	PF00487.19	FA_desaturase	143	398	2.40E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.372
SRR1783600	control	7.262
SRR1783602	moderate drought stress	3.362
SRR1811619	moderate drought stress	3.423

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.763
DRR006520	Root Summer glycyrrhizin high producing strain	6.581
DRR006521	Root Winter glycyrrhizin high producing strain	4.077
DRR006522	Root Winter glycyrrhizin high producing strain	3.875
DRR006523	Root Summer glycyrrhizin low producing strain	4.470
DRR006524	Root Summer glycyrrhizin low producing strain	4.538
DRR006525	Leaf Summer glycyrrhizin high producing strain	193.127
DRR006526	Leaf Summer glycyrrhizin high producing strain	192.920

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.413
SRR2868004	Drought Stress (root)	19.013
SRR2967015	Control (root)	11.290

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	241.622
SRR9715740	Leaf	319.124
SRR9715741	Leaf	181.750
SRR9715739	Root	2.291
SRR9715742	Root	6.964
SRR9715743	Root	5.836

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.118
SRR8749028	MeJA induced 9h	10.316
SRR8749029	MeJA induced 9h	5.308
SRR8749030	Uninduced	4.192
SRR8749031	Uninduced	1.325
SRR8749032	Uninduced	0.865

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.890
SRR8400027	Control - Root	15.998