Gene detail

Gene detail information of Glyur002870s00040965

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34430.1	4.00E-126	light-harvesting chlorophyll-protein complex II subunit B1
NR	XP_003548106.1	6.33E-178	PREDICTED: chlorophyll a/b-binding protein precursor isoform 1 [Glycine max]
Swissprot	tr\|P27495\|CB24_TOBAC	1.00E-177	Chlorophyll a-b binding protein 40, chloroplastic (Precursor)
trEMBL	tr\|B9S155\|B9S155_RICCO	4.00E-178	Chlorophyll A/B binding protein, putative {ECO:0000313\|EMBL:EEF42697.1}

Sequence

Transcript Sequence

>Glyur002870s00040965.1
ATGGGTGCCGTTGAGGGTTACCGTATTGCCGGTGGGCCTCTTGGTGAGGTGACCGACCCACTCTATCCAGGTGGCAGTTTTGACCCATTGGGCCTCGCTGACGACCCAGAGGCTTTTGCAGAGTTGAAGGTTAAAGAGATCAAGAATGGAAGCTATGTCTCTATGTTCGGGTTCTTCGTTCAAGCCATTGTGACTAGAAAGGGGCCTTTGGAAAACCTTGTTGACTATCTCACTGACCCAGTCAACAACAATGCTTGGGCCTATGCCACAAACTTTTCGGAGGAGGGGTGGGTCGTTCTAAATGTTGACGGGAGTGCCATAGCTAATCCGGGAAGGACTGGTTATGGTGGTCTGGTTCGTAACAAGGATGGTGAGTTCCTTGTAGGATTTTATGGGAGTGCGGGAATCTCCCATATTGGCCATGTAGAGATGCTTGCTCTGCTTCATGGGACATGGAGTGCTGTTCAATGTTACTCAGACTCTGCCAACACAATTCGCATGGTCAAGGAAGGGAATTCTACAATGGCTGCTTCAACAATGGCTCTCTCTTCCCCATCATTGGTCGGGAAGGCAATCAAGCTTGCTCCCTCTTCCCAAGACCTTGGGCTTGGAAGGGTCACCATGAGGAAAACAGCTGCCAAGACCATTTCTTCTGGAAGCCCATGGTATGGCCCAGACCGTGTCAAGTACTTGGGCCCATTCTCCGGTGATCCCCCGTCCTACCTCACTGGTGAATTCCCTGGTGACTATGGTTGGGACACTGCCGGGCTTTCTGCTGACCCAGAGACATTTGCCAAAAACCGTGAGCTCGAGGTCATCCACTGCAGATGGGCTATGTTGGGAGCCTTGGGTTGTGTCTTCCCTGAGCTCTTGGCCCGCAACGGTGTCAAATTCGGCGAGGCCGTGCGGTTCAAGGTCGGCTCTCAGATCTTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTAATCCACGCACAAAGCATCCTTGCCATCTGGGCTTGCCAAGTTATCTTGATGGGTGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTCGGTGAGGTGACCGACCCACTCTACCCAGGTGGCAGCTTTGACCCATTGGGCCTCGCTGATGACCCAGAGGCTTTTGCAGAGTTGAAGGTGAAAGAGATCAAAAATGGTAGGTTAGCCATGTTCTCTATGTTCGGATTCTTCGTTCAGGCCATTGTTACTGGAAAGGGGCCTTTGGAGAACCTTGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCTACAAACTTTGTCCCTGGAAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02870	13799	18371	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009765 photosynthesis, light harvesting

cellular_component
GO:0016020 membrane

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002870s00040965.1	PF00504.16	Chloroa_b-bind	1	62	1.50E-10
Glyur002870s00040965.1	PF00504.16	Chloroa_b-bind	238	404	9.80E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.286
SRR1811619	moderate drought stress	0.085

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.028
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.671
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.366

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.030
SRR2868004	Drought Stress (root)	0.037
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.303
SRR9715740	Leaf	3.681
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.008
SRR8400027	Control - Root	0.024