Gene detail

Gene detail information of Glyur002868s00034874.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01710.1	6.00E-84	Acyl-CoA thioesterase family protein
NR	KHM99382.1	1.49E-161	Acyl-coenzyme A thioesterase 8 [Glycine soja]
COG	YP_003103347.1	2.00E-34	acyl-CoA thioesterase II [Actinosynnema mirum DSM 43827]
trEMBL	tr\|I1N3P6\|I1N3P6_SOYBN	2.00E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G46610.1}

Sequence

Transcript Sequence

>Glyur002868s00034874.1
CTCTGTTCACCCCCACATCACCTCCGCCGAAGACTTCACCAATTAATTAATTAATTAATTAATACAAACTTTTCTTATGTTTTCTTTTTCTTTCTATCAAATTNTTTTTGATACAATTTCTATCAATTTTCTTTCGCTTTCTTCTCTTACCGGAACAAATTAAGCGTTAGTATACTGTATACACATCACAAATCACAAAATTATTACAATCCTCGAATCCATTCTGTCAGTGTAAATGGCGAAGGAAGAAGTGTTTGAGTTCCTCGGGTACGTTCCTCTGCTACAGAGGCTTCCTAGCTCCTCCGTACGGAAGATATCTCAACTTGTGATTGTCAAACGCTATGAGCCTGGAGAGTATGTTGTTCGTGCCGGAGAAGCTGGAGATGGTCTTTACTTCATTTGGGAAGGAGAGGCTGAGGTTATTGGATCTGCTGGCGCTGATGATGAAAATCATCTAGAGTTTCAACTGAAAAGATATGACTATTTTGGTTTTGGTAATGAACTTCATTCTTTTGCAGCTATGTTCAAAACTGCTCTTTGCTTTTTACAGAAGATTAATATGGACTTACAACTTGCAGGTTTATCANATGCAGTTCATCATGCTGATGTTGTAGCTTTGACTAAGGTAGATATCTTCAAAGGAATAACCCCTCTAGATGCTCCAAAATTTGGGAAGGTGTTTGGGGGACAATTAGTTGGACAGGCACTGGCTGCAGCATCAAAATCTGTTGATTGTCTAAAAGTTGTTCATAGCTTGCATTCCTATTTTCTTCTTACAGGGGATTTTAACATACCAATTATATATCAAGTTTACCGTCTCCGTGATGGGAAGAGCTTTGCTACGAGGAAAGTGGATGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCAGCTTCTATCATTGGAAGAGTTACGAGAGCAACGTCTTACTGACCCTCGTCTTCCAAGAACTTACCGGAACAAAGTTGCTACTACTGAATTCATTCCCTGGCCCATAGAGATACGGTTCTGTGAACCTAAACCTGCAACTAATCAGACCAAATCTCCTCCTAGTTTGAGATACTGGTTTAGAGCTAAGGGAAAACTGTCAGATGATCAGGCCTTGCATAGATCTAATATTTCTTCAAGTAAGTGTGAATCCTCACCGTGGGAAGGGCATAAAGTCACGTGCTGTGAGTCTGGACCACTCCATGTGGTTTCACAGACCTTTAAGAGCTGATGACTGGGTGCTATATGTGATCTTTAGTCCTACTGCCTATAATGCACGCGGCTATGTCACAGGCCAAATGTTCAATCAGAAGGGAGAGCTTCTTGTATCATTGGTTCAAGAAGGTCTAATGAGGAGGGTTAATTCCGAAAGACCAGCCATCAACTCTAAGTTGTGAACAGCTGAAAATGCACAGGGCATGNGATCAAAGTTTATACAGATCTGCTAAAATGCCATTATATTTTGTAGAAGTGAAAATAAAAGGAATGAAATGAAGGCTGATTGATTGAAGATTGATTATGCATTTAGACTTTGTATGGATAGTTAGTACACCGTCAATGTTATTAAAATTTCCTTAATGCAGTTTTAAACTCTTATCAAGCCCTTTTAACTAAATNCTTGCATAAAAGGAGTTTTCTTTGCTAGTTAATGGAATTTTATGATTTTGGATCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02868	22700	29027	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01068	ACOT1_2_4	EC:3.1.2.2	Fatty acid elongation	map00062
			Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

biological_process
GO:0006637 acyl-CoA metabolic process

molecular_function
GO:0047617 acyl-CoA hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002868s00034874.1	PF00027.24	cNMP_binding	34	86	1.50E-07
Glyur002868s00034874.1	PF13622.1	4HBT_3	146	290	1.10E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.167
SRR1783600	control	16.684
SRR1783602	moderate drought stress	13.763
SRR1811619	moderate drought stress	13.925

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.694
DRR006520	Root Summer glycyrrhizin high producing strain	20.725
DRR006521	Root Winter glycyrrhizin high producing strain	13.188
DRR006522	Root Winter glycyrrhizin high producing strain	12.046
DRR006523	Root Summer glycyrrhizin low producing strain	14.856
DRR006524	Root Summer glycyrrhizin low producing strain	14.961
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.384
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.607

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.709
SRR2868004	Drought Stress (root)	32.967
SRR2967015	Control (root)	30.753

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.238
SRR9715740	Leaf	13.805
SRR9715741	Leaf	17.636
SRR9715739	Root	11.630
SRR9715742	Root	12.871
SRR9715743	Root	11.979

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.567
SRR8749028	MeJA induced 9h	11.411
SRR8749029	MeJA induced 9h	9.405
SRR8749030	Uninduced	13.238
SRR8749031	Uninduced	9.486
SRR8749032	Uninduced	8.549

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.806
SRR8400027	Control - Root	32.148