Gene detail

Gene detail information of Glyur002868s00034873.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45880.1	0	beta-amylase 7
NR	KEH23361.1	0	beta-amylase-like protein [Medicago truncatula]
COG	YP_004639880.1	6.00E-44	beta/alpha-amylase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|O80831\|BAM7_ARATH	0	Beta-amylase 7
trEMBL	tr\|A0A072U1V6\|A0A072U1V6_MEDTR	0	Beta-amylase-like protein {ECO:0000313\|EMBL:KEH23361.1}

Sequence

Transcript Sequence

>Glyur002868s00034873.1
AAAAAATGCGTTGCACGTGTTAACCCGCAGCAAGTTGCATGTGAAGGTTAACACGCACGCCTCGTTCGTGCCAAATTCCCAAACACGCTCGTCTCNGCACACACGACACGAGCGAGAATCCTACCTCGTGAGAAGCATCTCGCATGCTTCACTCNCACGCTCGCTCGCGTCTCCCTCGCCGGCCGGACCTTGCCCCTTTCTCGCCGCCGGATACTCGCCGGTGCCGACGTTCCCTCTCCTGATCTAGATACTTCCGGATTCCTCTCCTTCTCCGTCAATTCGCGCCGGAACTCCGCGCCGGTCGCCGGGAATTTCGGTACCCGACGGAGTTGTCGAGAATCTGGCGAGGAGAAGACGGATCTGCCGGGGAATTTGTTCGTAGAAGGATGATCTCGACCTCGAAGCCTGTGGAATTCAGTTTGGCATGGCTTTTTTGGTTTGAAATGGAGATTCATTAATTTTGATGGGATTGGCAATCAACAGAATCAGTAGGATAGTTTTGCATTAACTTGAACTATTGAGGGTTCCGACTTGGGATGATGGCCACTGATATGCAGAGGCTCGTTGGAATGAGTGAGGATGATGAGGAAGAAATGGGAATGGGTGTGAAAGATGAGGATGATGAAGATGACGATTATGAGGAAAACGGAGGTGACCATGGAAATGCTTCAGGGATGGTAGAGATTGATGGTGGGAGCGGGATAGGAACTGCCACTGGTGACAACAGGTTTCACCAGCACCAGCAGTTTCAAGAGCAGGTAGGCACTCCGGGTGGAGGTACTCGCAGATCTAGGCCGGTAGAGGAGAAAGAGAGAACGAAGCTAAGAGAGAGGCGTCGGAGGGCTATCACTGCAAGGATCTTGGCAGGGCTTCGCAGGCATGGCAACTACAATCTTAGAGTTAGAGCTGACATAAATGATGTCATTGCTGCTCTTGCAAGGGAAGCTGGATGGGTGGTTCTTCCAGATGGCACTACTTTTCCCTCAAAATCTCAGACATTAACTCTTGGTACTTGTTATATAGTTGAGTTCTTTGCTTATTCTGACAAATCTCAGAAAAACCTCCCACATTGGAACCTTTTCTTCTCAACCTTACAGGGTCAAAGGCCAGCTGGTGGTAATTCTACAGTTGTTACTTCACCATCTTCTCATGTGCCTTCTCAGCAGGCTCCATCTGCTTCCCTCCGGGGAGTTGCTCCTGGCTATAGGAACCCTTTAGAGTATAATAATGCATGTCAAATGAAAGGTGTTTTCATGCCAGCTCCATCTCCTTTTGATCTATCCTCAAGTTCCCGGTCTCAAACACCTATGATGGGGGATGGAGAAGCACAAAGAGACAATCATCCTGTGATTGGTGCTTCAATGAATACAGTTGATGAGAAGCAGATTGTTGAAATTCCCCCCAGATTACCAGAGCGTGATTTCGCTGGGACCCCATATGTTCCTGTATATGTGATGCTACCGTTGGGGGTGATCAATATTAAATGTGANCTTGTTGATCCGGATGGTCTACTAAAGCAGCTGAGGGTGTTGAAATCAGTAAATGTTGATGGTGTTATGGTGGACTGCTGGTGGGGAATAGTGGAGGCACATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGTGAGCTTAAGCTTAAGCTGCAGGTTGTGATGTCTTTTCATGAATGTGGAGGCAATTTTGGTGATGATGTCTGTATTCCATTACCCCATTGGGTTGCTGAAATNGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAAGGAAGACACAACCCTGAATGTCTTTCTTGGGGAATAGACAAGGAACGGGTTTTGAGAGGTCGGACTGCTTTGGAGGTTTATTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTCGAGGATGGCTTCATCTCCATGATTGAAGTTGGACTAGGTCCATGCGGAGAGCTAAGATACCCATCCTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATCGGTGAATTCCAGTGTTATGATCAGTATNTGTTGAAAAGTCTTAGGAAGGCAGCAGAAGTAAGAGGGCACTCTATTTGGGCTAGAGGGCCAGATAATGCGGGTACCTATAATTCTCAGCCACACGAAACCGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAACTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCCTGCATTGCTGCAAAGCTATCAGGTATTTATTGGTGGTACAAGACTGCTAGTCATGCTACTGAATTAACTGCTGGGTATTATAACCCATGCAATCGTGATGGCTATGCTGCAATTATGGCAATGTTAAAGAGAAATGAAGTTAACTTAAACATTGCCTATGTTGACCTGAACACATTGAATCAAAATGAGGGCTTTCCAGAGACATTTGCTGATCCTGAACGATTAGTTTGGCAAGTGTTGAATGCAGGTTGGGATGTTGGCCTACCAGTAGTCAGTGAGAATGCACTTCCTTGCCTAAACAGAGTTAGCTATAACAAGGTTTTGGATAATGCCAAGCCCATGAATGATCCAGATGGAAGGCACTTTTCATCCTTTACTTACCTGAGGCTCAGTCCACTTCTTATGGAACGACAAAATTTCATAGAGTTTGAACGATTTGTCAAGAGAATGCACGGAGAAGCTGTTCTTGATCTTCAGGTATAACAGGTGGAAAAGAGAATCTGATGGAATTTGTACTTATAGTTTCCCCGACAAAATGGTTGGGGTATCCTGATACATATTAGGAGAATAGGATTGTCATTTGCTAAGGCACATACTAGTTGTTAGTCAAGTAGTTGATTAGGATACGCTTTTTTTGTTTTCTTGTGGAATCTAACTATTCACATTAGAATCTGGATGTAAAATTTGTCCATACATGCGCAACTCATTGACCTTCTGTATTAGCCACTAGCCCACTACACAGTGATCTGTACAATTTTAGCACTTGCTACTTTACATCAATGTAGTAGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02868	14870	21894	+

Gene family

Gene family	subfamily
Transcription Factors Family	BES1
Carbohydrate-Active enzymes Family	GH14

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01177	E3.2.1.2	EC:3.2.1.2	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0000272 polysaccharide catabolic process

GO:0005975 carbohydrate metabolic process

molecular_function
GO:0016161 beta-amylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002868s00034873.1	PF05687.8	DUF822	80	175	3.10E-37
Glyur002868s00034873.1	PF01373.12	Glyco_hydro_14	305	724	1.60E-100

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.525
SRR1783600	control	10.517
SRR1783602	moderate drought stress	16.194
SRR1811619	moderate drought stress	16.005

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.732
DRR006520	Root Summer glycyrrhizin high producing strain	14.827
DRR006521	Root Winter glycyrrhizin high producing strain	16.548
DRR006522	Root Winter glycyrrhizin high producing strain	16.183
DRR006523	Root Summer glycyrrhizin low producing strain	18.490
DRR006524	Root Summer glycyrrhizin low producing strain	18.179
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.837
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.729

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.307
SRR2868004	Drought Stress (root)	23.389
SRR2967015	Control (root)	24.595

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.892
SRR9715740	Leaf	16.145
SRR9715741	Leaf	16.222
SRR9715739	Root	5.428
SRR9715742	Root	14.084
SRR9715743	Root	13.452

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.726
SRR8749028	MeJA induced 9h	20.415
SRR8749029	MeJA induced 9h	10.149
SRR8749030	Uninduced	13.500
SRR8749031	Uninduced	9.282
SRR8749032	Uninduced	11.121

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.846
SRR8400027	Control - Root	15.713