Gene detail

Gene detail information of Glyur002867s00037025.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57740.1	3.00E-172	XB3 ortholog 2 in Arabidopsis thaliana
NR	AES92434.2	0	E3 ubiquitin-protein ligase XBOS32 [Medicago truncatula]
COG	YP_003205668.1	2.00E-21	hypothetical protein DAMO_0764 [Candidatus Methylomirabilis oxyfera]
Swissprot	tr\|Q6KAE5\|XB32_ORYSJ	0	Probable E3 ubiquitin-protein ligase XBOS32
trEMBL	tr\|G7JEC0\|G7JEC0_MEDTR	0	E3 ubiquitin-protein ligase XBOS32 {ECO:0000313\|EMBL:AES92434.2}

Sequence

Transcript Sequence

>Glyur002867s00037025.1
CTCGTTAAAATTGGTGAAACGAGGGGCATTGGCATGTTTGACCCCTGGGTAAGGAGACGAGCCGAGTAGCAACTTTGAGGGCCTCGATCTGTGTGTGAGGTGTTTTTTGATGTGATGAGGAATTTTTCCTCCGCAAAGAGAGGGGACAAAGAAGGAAACGACACAACCACCAAGTTGACTCCTTAATAATACTCATACTATATCCAATCATGGTCACACGCCTTTTGTTTTGGGGGCTCTCTCTCTCTCTTGCTGGCTGTTAATGGTTTTTCCTGAAGAAGCTCAACTCTAAAAAAAAAAACTTGCTTTTTTCTTTCTCCCAATAACATCTGTCACCCCTTTTGGATATTTGGTTTTTTTCTCTCCTTAATTTTATCAAATTTCNTGTTTAAGGAAAATACCCTTCCCGTCATCCTCGTTGTAAAAATGATTTTGCGTCCATTGGGTCTGATGGAGGAGGTTTGATTGTCAATCATCAATCTTCTCCTAGAAACCAGAAAACGTCTTACCCCTTTCTGTGTTTCGATCGTCCCAGAGGGGCAAAAAAAAAAAACCTATCTATGAAGAAACTTTTGAGGTGGGGTTGTGGGATTCTGATTCAGATGGTGTGATTGTTGTGAATGTTGTAATTGTCCATTGGGGAACAATTGGAAGCTGGTTTATTCCCTCCACAACAAGTTTCATTCTTTAAAAGGAATATATTTGGAAGTTGATGTCAGGCACACGGTATCCCCTTAGANATTCTTCTCAAAGTTTGAGAGTCAGCAATTCACTGGTTGCACGGGCTTAAGGTTTGTGGACAAAACCACGGGAACCTGTCTCCCTCTCTCTCTCTCTCTCTCTCTCGAGAATCATGTGATGGTGGTCTTTGACAGTTATAACCAATTCACTGGGATGTTTAAGAAATTCTGATAGGGTTGTTGTTAGTTTGGTAGATGAAGAAGTACCAAGTCTCTATATCAGAATTTTCGGATTGATTAAGGTTTGATGATGTCATGTGGGGAATGTTTGTCCTGAGGAGAAATTGGGGCCTTTTTGTAAGGCTGTGAAGAAGGAACCCCTGCTCCCAATTTTCCTGAGTAGTTTAAATTGGTTGTCTTGATTTCTGAGGGACATGAGATTTCTGAGCCTGGTTGGGAATTCTTTTGGNTGTTCTGCATCTGGGGAGCGCCTAGTTTCTGCAGCAAGAGATGGGGATGTTCAAGAGGCTAAGGCCCTGTTGGAATATAACCCTCGTCTTGCAAGGTATTCCACTTTTGGAGTTCGCAATTCTCCCTTGCATTACTCTGCAGCTCATGGCCACCATGAGATAGTGTATCTCTTGCTTGAGTCCGGAGTTGATATCAATCTCAGGAATTATCGTGGTCAGACTGCATTGATGCAAGCTTGTCAACATGGTCACTGGGAGGTGGTACAGACCCTGATTATTTTTAATGCCAATATTCATAAAGCAGATTACCTAAATGGAGGCACTGCCCTCCACTTGGCTGCTTTAAATGGCCATACCAGGTGCATTAGGCTCCTCCTGGCAGACTATTTACCCAGCATCCCTAACTTTTGGGCTGTATTGCAGACAGGTGATGATAAACCAATCTNGGAATTTGATCAAAGTGGTCTCTGTGAGGTGATTAACAGAACTTCTGATGGAGGGATCACTGCTCTGCATATGGCAGCATTGAATGGGCATGTTGAGAGTGTGCAGTTGCTCTTAGACTTGGGTGCTTCTGTGTCTGAGGTTACCGTGGAGGATGGAACCACCATTGATTTAATTGGTTCTGGGAGCACTTCACTCCATTATGCTGCATGTGGTGGAAATGCACAATGTTGTCAACTTTTGATTGCCAAGGGTGCCAGTCTGACTGCTGAGAATGCAAACGGATGGACCCCCTTGATGGTTGCTCGTTCATGGCATAGAAACTGGCTCGAAGACATCTTAAAAACACCTCCAGCAGACAATTTACAAGTTCTCCCTTCGCCATATATATCTCTTCCACTTATGAGCATTGTTAGAATTGCTAGAGAATGTGGATGGAGAACGAGTGAATTAGCACCAACATGCTTAGATCCATGCGCTGTTTGTTTGGAAAGGCAGTGTATGGTCGCTGTGGAAGGTTGTGATCACGAGTTCTGCACACAATGTGCCTTGTACCTTTGTTCTACAAACCCAACTTCAACAAGCACACATGGTCCACCAGGTTCAATTGCTTGTCCTCTCTGCAGACACGGCATAGTATCATTTGTGAAGCTTCCAGGAGCAAGACCTCTACTTAAGCAAATGCAAAGGTCGACAACAACAAACTTGTCCCTAACATTCTGCACATGTGCAAGTGAGGTTCTAGAGGATACCGCTGACATGACAACCCCATTTTGCAAACCAGCTACTACTTCTTCCCGTGGATCCAAAACATCATCCTCATCCTCACCCTCAAGATCATTCCGCTCCTTGAGCTGCCAGAGATTCTCTTCATTCAGAATGAACACCAGCCTTTGCCTCGGATCAGATGTTAGCCCTTCCTTGGTTCCTTGCAGCAGGAACCCCAGGAACCATTTGGCAAGATGTTCTGGTTCTGGTTTTAGGCGATCATCTTCTCAACCTGAGAGAAGGAAGTCTTGGTTTTGTTCCCTCAACCAATCTGTTGCTACAGGCAGTGGATGCTGATTTCTTTTTTTCTATTTTTGGTTATCTTTATATATATGCTTTTCATTTATTACACCAATATATAAGCAGTATCCAACATGATATTCTTGATTCCAAATATCATCCACTGTTGACACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02867	15409	21866	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002867s00037025.1	PF12796.2	Ank_2	20	112	2.10E-19
Glyur002867s00037025.1	PF00023.25	Ank	117	138	2.10E-05
Glyur002867s00037025.1	PF00023.25	Ank	179	209	1.90E-08
Glyur002867s00037025.1	PF12796.2	Ank_2	211	267	5.30E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.254
SRR1783600	control	11.461
SRR1783602	moderate drought stress	16.142
SRR1811619	moderate drought stress	15.994

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.333
DRR006520	Root Summer glycyrrhizin high producing strain	11.557
DRR006521	Root Winter glycyrrhizin high producing strain	22.799
DRR006522	Root Winter glycyrrhizin high producing strain	21.612
DRR006523	Root Summer glycyrrhizin low producing strain	16.682
DRR006524	Root Summer glycyrrhizin low producing strain	16.662
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.115
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.166

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.409
SRR2868004	Drought Stress (root)	57.059
SRR2967015	Control (root)	48.012

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.455
SRR9715740	Leaf	23.861
SRR9715741	Leaf	34.738
SRR9715739	Root	13.533
SRR9715742	Root	24.551
SRR9715743	Root	21.981

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.336
SRR8749028	MeJA induced 9h	18.163
SRR8749029	MeJA induced 9h	17.155
SRR8749030	Uninduced	25.861
SRR8749031	Uninduced	25.397
SRR8749032	Uninduced	24.058

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.669
SRR8400027	Control - Root	30.109