Gene detail

Gene detail information of Glyur002867s00037021.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14850.1	0	Alg9-like mannosyltransferase family
NR	XP_004507791.1	0	PREDICTED: GPI mannosyltransferase 3-like [Cicer arietinum]
COG	YP_005015751.1	6.00E-11	Alg9-like mannosyltransferase family protein [Tannerella forsythia ATCC 43037]
Swissprot	tr\|A8MR93\|ALG12_ARATH	2.00E-08	Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
trEMBL	tr\|I1LVW1\|I1LVW1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G01500.1}

Sequence

Transcript Sequence

>Glyur002867s00037021.1
ATGAGACGAAGACGCGACAATGTCAATGATGACAACGATGAAGAAGATAAACAGAGAATCCAAACTCCAGAGTTTCCCAAATCATCATCAGAAGATTCAGAACAGTTCTCCTTCTCTCGTTCACAGAAACGAGTCTTCGCTTTCTGCCTGGCATTCCGAATGCTGAATTCTCTCTTNGTGCAGAGTTACTTCAACCCCGATGAACACTGGCAGGGTCCCGAGGTCGCGCATCGCNTCGCCTTCGGGTACGGTCACTTAACATGGGAGTGGAAACAGGGTATCCGAAGCTACTTGCATCCCATGCTCTTTGTTCCGCTTTACAGGCTTCTCGCCTTGCTGCGACTCGATATCCCTTGGCTCATGATGAGGGCTCCAAGGTTACTGCAGTCTGTGTTCTCTGCAGTTGGTGATTTGTANTTGTACAAACTCTCTGCGGTTCTCTTTGGTGACCGTGTTGCAAAATGGGCACTCTTTTCGCAGTTGTCCAATTGGTTTATGTTTTATTGTTTTCCTCGGACACTGTCGAATAGCTTGGAGACTGTTCTTACACTGGTGTCTCTGTACTTTTGGCCCTGCATGAGATCTTCCGGGAAATGTTCCTTTGTTTCAAGGAAGTGGGGTTTAGTTGTGGCAGCATTGGCTTGTGCTGTTCGGCCAACAAGTGCAGTCACATGGCTGTATGTTGGCCTCCTTGAGCTTTTTAAGGCACTTGACAGATGGAAGTTCATTTTTTTGGAGGTAGCTCCTATTGGGATTCTGGTGCTTGGGCTTACCTGCTTATTAGATCGTTTTATGTATGGCACGTGGATTCTAGTACCACTTAATTTTCTAAAATTCAATTTTCTTTCCTCTGGTGGAGACTATTATGGAACTCACAGGTGGCACTGGTACTTAACTCAGGGATTTCCAGTCATGATCTTCTCTCATTTACCATTTTNTATAGCTGGTATCATTTATTCCAAACAATGGAAGCTTGCTGGCCTCCTTGCATGGGTATTGGGTTTCTACAGTATACTAGGCCACAAGGAATTCAGGTTTGTCTTGCCAGTTCTTCCCATAGCTCTGATGTTCTCTGGTTATTCTTTGGCTGTGATAGAAGATCCCGGTTCCCCAGAGTGTAAAGGAAAAGAATCTTCAAAAANGCATACCAAATGTCCTCCCAAGATGAAAGTTGCTATCTTATTTTTGCTTGCTACCAATATACCTATGGCTCTGTATATGAGTTTGGTTCATCAGAGAGGACCTGAGGATGTCATGAACCACCTTGCTGGAGAAGCTAGTCATGGGAAAGTGAGAAGTATCCTATTCCTAACGCCTTGCCATGCTACTCCATACTATTCCATGCTGCATCATAACTTGCCAATGCAATTTCTGGACTGCACACCAAGCAGTGAAGAGAAAGAAGTCCTAGATGAGTCTGACCGGTTCATGATGGACCCTGTTTCNTTTGTGTCTGAATATGCAAAAAGTTGGTCTCTGCCCAGCCACATTGTTTTATTTGATTCAGAAGAGCGAAAATTGAGGGACTTCTTAATTTCATTTGAATATAGAGAGGAAAAAAGATATTTTCATGCTCACTTCAAGGTAGATCGTGATCTTCAAGCTTCAATTGTTGTATACGTTCGAATAAGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02867	2513	5814	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT22

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05286	PIGB	EC:2.4.1.-	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	map00563

Gene Ontology

molecular_function
GO:0016757 transferase activity, transferring glycosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002867s00037021.1	PF03901.12	Glyco_transf_22	45	450	7.40E-114

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.282
SRR1783600	control	6.299
SRR1783602	moderate drought stress	6.649
SRR1811619	moderate drought stress	6.753

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.694
DRR006520	Root Summer glycyrrhizin high producing strain	7.499
DRR006521	Root Winter glycyrrhizin high producing strain	2.110
DRR006522	Root Winter glycyrrhizin high producing strain	1.897
DRR006523	Root Summer glycyrrhizin low producing strain	6.551
DRR006524	Root Summer glycyrrhizin low producing strain	6.373
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.012
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.935

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.360
SRR2868004	Drought Stress (root)	11.949
SRR2967015	Control (root)	11.874

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.231
SRR9715740	Leaf	8.292
SRR9715741	Leaf	6.088
SRR9715739	Root	3.772
SRR9715742	Root	4.936
SRR9715743	Root	4.817

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.241
SRR8749028	MeJA induced 9h	5.493
SRR8749029	MeJA induced 9h	2.616
SRR8749030	Uninduced	3.438
SRR8749031	Uninduced	1.230
SRR8749032	Uninduced	1.062

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.180
SRR8400027	Control - Root	11.424