Gene detail

Gene detail information of Glyur002864s00039327

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13940.1	5.00E-57	DNA binding;DNA-directed RNA polymerases
NR	XP_003546428.1	6.81E-137	PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Glycine max]
trEMBL	tr\|I1MH27\|I1MH27_SOYBN	1.00E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G17850.2}

Sequence

Transcript Sequence

>Glyur002864s00039327.1
CAACATAATGGACTCTGATGCAGAAGACGCAAAACCCCTACCCCAGCTAGCAAAAAAGATGAAGAAGAAAAAGAAAAAGGAAACCCAACCTGAACCGGAACCCGGACCGGTTCAGGTTCAGGCCAAGGTCCAAGTTGTCCATGAGAACCCAAGTAAAACGCCTCCTATTATTGGCTATTTCCCTTCTGGCTTTGATCTGATCAAGTCTTCTCGCAACGGTTCAACCGGTTTCGAAGTTTACCGAAACAAGAACATGACCAAAAGGCTTCAGCTTGTGGTTAGCCCTGCTGGCTCTCCAGTTGAATTTGTTGGAAGCAGTTATTCCGGTGAGGCTGCCGCCAGACACCGAGCTATATTGGATCCAAAAGTTAAAGNCTTGGAAGCTGCTGAAAAGGAGCCTGCGATCTCGACGATGGAAGAGATGACTCCGCANNAGAAGGCAGTGAAAGAGCGAGAGACTACTGCTATATTTGGAACAAAGAAGGAAATAGAGAAGGCTAANAAGAAGCTAGCTATCAGACAAGATGACGATCCTGAATCTCAAAAGAATCTGGATGTGAAAATGAAAAATGTAGTAGTGAACAAAAAGGCTCTTGAAACCACAGAGTCTCATGTTTCTCGCAATATACCACCATATGATGCTTCTGCGACTACACCTCAGAAGGCTTATGTATTGGACAAAATCATCCTTAAAGGAGAATGGGATTANCTTGAAGACATTTATAATATTTTGCAACAGGGAGAAGAAGCAGACTTCAGTGCTTACCCAACTTTTATTTGCAATAGGATACAAAGACTAAAGAAGATTAAGCACTCCCCGGATGGTGTTTCCTCCGCGAAGGGCCATAAAATTCCAATATTCTGCGTCACAAGTTTTCATCGATGTTTGAAGTTTCCGAATCGAAATGGCTTCCTGCTGAAAAGATTGATCTTCTCATTTTCCTATGTCTTGGTGCTGACACTTTTCTCCGATGAGTTCCGAACCGACTACAGAGATATAGCAAAGGACCTGAAGATGAGTTCCGTGCACTTGAGAGAACCCTATGTGCATTTGGGTTGCAAAATTTCGCACCAGAAAAACATATCCTATGCCACACTTCCTGTCCCTCTAAAATTTCCTGATTTGAGGCAAAAGAAGCGGAAAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02864	16859	21883	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006351 transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003899 DNA-directed RNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002864s00039327.1	PF06870.7	RNA_pol_I_A49	71	270	1.50E-15
Glyur002864s00039327.1	PF06870.7	RNA_pol_I_A49	312	380	7.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.692
SRR1783600	control	19.153
SRR1783602	moderate drought stress	36.831
SRR1811619	moderate drought stress	33.098

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.911
DRR006520	Root Summer glycyrrhizin high producing strain	30.750
DRR006521	Root Winter glycyrrhizin high producing strain	28.617
DRR006522	Root Winter glycyrrhizin high producing strain	27.606
DRR006523	Root Summer glycyrrhizin low producing strain	16.276
DRR006524	Root Summer glycyrrhizin low producing strain	17.317
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.118
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.437

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.469
SRR2868004	Drought Stress (root)	11.728
SRR2967015	Control (root)	9.592

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.852
SRR9715740	Leaf	7.140
SRR9715741	Leaf	11.342
SRR9715739	Root	0.483
SRR9715742	Root	4.651
SRR9715743	Root	5.608

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.498
SRR8749028	MeJA induced 9h	31.396
SRR8749029	MeJA induced 9h	27.154
SRR8749030	Uninduced	34.509
SRR8749031	Uninduced	25.328
SRR8749032	Uninduced	29.292

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.190
SRR8400027	Control - Root	30.305