Gene detail information of Glyur002860s00039120 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31600.3 | 2.00E-52 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | XP_006587660.1 | 2.51E-98 | PREDICTED: alkylated DNA repair protein alkB homolog 8-like isoform X3 [Glycine max] |
| Swissprot | tr|Q9SJG8|AML2_ARATH | 7.00E-07 | Protein MEI2-like 2 |
| trEMBL | tr|K7LFB4|K7LFB4_SOYBN | 9.00E-100 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G35080.7} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02860 | 29701 | 32678 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002860s00039120.1 | PF13893.1 | RRM_5 | 37 | 93 | 4.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.051 |
| SRR1783600 | control | 8.608 |
| SRR1783602 | moderate drought stress | 6.202 |
| SRR1811619 | moderate drought stress | 6.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.462 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.159 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.973 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.847 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.697 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.050 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.873 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.046 |
| SRR2868004 | Drought Stress (root) | 0.978 |
| SRR2967015 | Control (root) | 1.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.223 |
| SRR9715740 | Leaf | 5.151 |
| SRR9715741 | Leaf | 9.457 |
| SRR9715739 | Root | 2.484 |
| SRR9715742 | Root | 11.042 |
| SRR9715743 | Root | 7.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.544 |
| SRR8749028 | MeJA induced 9h | 0.689 |
| SRR8749029 | MeJA induced 9h | 0.226 |
| SRR8749030 | Uninduced | 0.070 |
| SRR8749031 | Uninduced | 0.208 |
| SRR8749032 | Uninduced | 0.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.968 |
| SRR8400027 | Control - Root | 13.286 |