Gene detail information of Glyur002860s00039117 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31650.1 | 3.00E-162 | RHO guanyl-nucleotide exchange factor 14 |
| NR | XP_003517093.1 | 0 | PREDICTED: rop guanine nucleotide exchange factor 14-like isoform X1 [Glycine max] |
| Swissprot | tr|Q56WM6|ROGFE_ARATH | 0 | Rop guanine nucleotide exchange factor 14 |
| trEMBL | tr|K7K403|K7K403_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G35540.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02860 | 4575 | 11672 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002860s00039117.1 | PF03759.8 | PRONE | 115 | 465 | 2.20E-138 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.104 |
| SRR1783600 | control | 40.341 |
| SRR1783602 | moderate drought stress | 19.743 |
| SRR1811619 | moderate drought stress | 19.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.833 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.239 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.235 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.283 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.398 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.394 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.619 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.299 |
| SRR2868004 | Drought Stress (root) | 7.557 |
| SRR2967015 | Control (root) | 8.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.567 |
| SRR9715740 | Leaf | 17.087 |
| SRR9715741 | Leaf | 13.047 |
| SRR9715739 | Root | 9.175 |
| SRR9715742 | Root | 7.283 |
| SRR9715743 | Root | 8.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 81.255 |
| SRR8749028 | MeJA induced 9h | 45.503 |
| SRR8749029 | MeJA induced 9h | 45.633 |
| SRR8749030 | Uninduced | 0.874 |
| SRR8749031 | Uninduced | 0.683 |
| SRR8749032 | Uninduced | 3.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.170 |
| SRR8400027 | Control - Root | 42.153 |