Gene detail

Gene detail information of Glyur002859s00040542

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60500.1	1.00E-80	Dynamin related protein 4C
NR	XP_003629867.1	2.01E-162	Interferon-induced GTP-binding protein Mx [Medicago truncatula]
Swissprot	tr\|Q9ZP55\|DRP4C_ARATH	1.00E-89	Dynamin-related protein 4C
trEMBL	tr\|G7L7C0\|G7L7C0_MEDTR	7.00E-163	Dynamin 4C-like protein {ECO:0000313\|EMBL:AET04343.1}

Sequence

Transcript Sequence

>Glyur002859s00040542.1
ATGGTTGTGGGAGAGAAAAGTGCTACCAAGGCCACTGTGGGTGTGAATCAACGTGAGGAAGCACTTGCATTAGTCCATGCAGAAGAGCAGCCACANCCTCTTGCTGTTGCAGTTGCACCAATAGTGTCTTCTTACAATGAGAAGATACTTGCTGATGCTATGTCCACTTTCGTGCATATTGTTGTTTTGTCTAGAGATTCTCTTAGAAAGATTCTTGTCGTTGGAGATTTTGAGGAGTACCCCGAAGAAAAGCACATGCATTGCACTGCTCGGTTGGTTGAGATGCTTGATTCGTTCTCTAGTGATCTTCACAACTGTGCGGAAATTGATGCCACAAAGGATTTTCTTATGGAGGAGATAAAGGCGCTTGAGGAAGCCAAATCCATTGGTCTACCAAATTTCATGCCCAGAACTGCATTCCTTACTATACTGCAGAGGAAAGTGAAGGGAGTTTCAACGATGCCAAGAACTCTGGTNGATAAAGTATGGTCTTATCTGGAAAATGTAGTAATTTCTGTTTTAATGCATCATTCTGGGAACTACTACCAGCTTCAGGTCTCAGCCAGAAAAGCTGTTCAGAATCTCATCTATAGAAAGAAGGAAAATTCAATCAAACATGTGACTGAGGCTGTAGAAATGGAGAAGCACACGGATTATACTTGTAATCCTGAGTACTTGCTGGAGTATAATAAGCTAATCTCTCGTCAAGATGCATTTGTGAAGGAAGTGTTGAAAAATGATCCGAAGATAACCCTTGTGATGATTGAAGGTGTTGGGAAAATTGACATTTCTAATCTGAAAAAGTATCCTCCCCTTATGCTTAATCAGGCATTTGATCTCAAGGTTAGGATGATGGCATATTGGAAGATTGTTCTCAGGAGATTGATTGATTCTATAGCTTTGCATTTAATGTTACGTATCAATGAACTGATAAATAAGGATTTGGAAGATGGGATATGTCAAAACTTGTTTTCTGCAAATGGTGGTGGAATTGAAAGGCTGCTGGAGGAGACTCCCTCTATTTCTGGGAAGAGGCAAAAGTTAAGCAGAAGTGTGAAGGTTCTTAGAGAAAGCAAGGAGACGGTTGCTAATATCATGGACAGGATTGCTGCATATGGTAGTTTTAGTTCTAAGGTGTGCTTAAGAAGGAAGCCTCAACCCCTTGCAGTTGCACCAATAGTGTCTTCTTACAATGAGAAGATACGTCCAGTTCTTGATGCCCTTGAGAATCTAAGGCGCCTTAACTCCATTGTGGGTATTCCAGTTTTGGCTCAAAAGCTGGTTCGGGTTCAGGCTATGATTATTTCCAAAACTCTGCCAAAGATTGTGAAGAAGATCAGTGAGAAGCTTGATAATAATTTAGCCGAGTTAGATAAACTTCCTGCTAACTTGACTTCNGTTGCTGATGCTATGTCCACTTTCGTGCATATTCTTGGTTTGTCTAGAGATTCTCTTAGAAAGATTCTTGTCGATGGAGATTTTGAGGAGTACCCTGAAGATAAGCAGATGCATTGCACTGCTCGGTTGGTTGAGATGCTTGATTCGTTCTCTAGTGTTCTTCACAACTGTGAGGAAAGTGATGCCACCAAGGATTTTCTTATGGAGGAGATAAAGGTGCTAGAGGAAGCCAAATCCATTGGTCTACCAAATTTCATGCCCAGAACTGCTTTCCTTAATATACTGCAGAGGAAAGTGAAGGGAGTTTCAACGATGCCAAGAACTCTGGTCGATAAGGTATGGTCTTATCTGGAAAATGTAGTAATTTCTGTTTTAATGCATCATTCTCGGAACTACTGTCAGCTTCAGGTCTCAGCCAGAAAAGCTGTTAAGAATATCATTTATAAAAAGAAGGAAAATTCAATCAAACATGTGACTGAAGCTGTAGAAATGAAGAAGCACACGGACTACACTTGTAATCCTGAGTACTTGCTGGAGTATAATAAGCTAATTTCTCGTCAAGATGCATTTGTGAAGGAAGTGTTGAATAATGGTCCGAGCTTGGGTTATCTTCGGAGTCCGAACNCGAAGATAACCCATGTGATGCTTGAAGATGTTGGGAAAATCGATGTGTCTAATCTGAAAAAGAATCCCCTTATGCTTAATCAGGCGTTTGATCTCAAGGTTAGGATGATGGCATATTGGAAGATTGTTCTCAGGAGATTGATTGATTCTGTAGCTTTGCATTTAATGTTAAGTATCAATGAACTGATAAACAAGGATTTGGAAGATGAGATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02859	19828	32942	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002859s00040542.1	PF01031.15	Dynamin_M	67	229	1.60E-16
Glyur002859s00040542.1	PF02212.13	GED	280	364	8.70E-12
Glyur002859s00040542.1	PF01031.15	Dynamin_M	411	646	2.40E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.441
SRR1783600	control	2.527
SRR1783602	moderate drought stress	4.477
SRR1811619	moderate drought stress	4.365

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.404
DRR006520	Root Summer glycyrrhizin high producing strain	5.906
DRR006521	Root Winter glycyrrhizin high producing strain	0.322
DRR006522	Root Winter glycyrrhizin high producing strain	0.287
DRR006523	Root Summer glycyrrhizin low producing strain	2.862
DRR006524	Root Summer glycyrrhizin low producing strain	2.478
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.956
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.008

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.412
SRR2868004	Drought Stress (root)	2.125
SRR2967015	Control (root)	2.768

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.313
SRR9715740	Leaf	2.834
SRR9715741	Leaf	4.155
SRR9715739	Root	1.009
SRR9715742	Root	7.465
SRR9715743	Root	6.628

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.063
SRR8749028	MeJA induced 9h	0.055
SRR8749029	MeJA induced 9h	0.128
SRR8749030	Uninduced	0.014
SRR8749031	Uninduced	0.053
SRR8749032	Uninduced	0.038

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.825
SRR8400027	Control - Root	7.007