Gene detail information of Glyur002859s00040539 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25280.1 | 3.00E-37 | Major facilitator superfamily protein |
| NR | XP_004504417.1 | 8.77E-156 | PREDICTED: probable peptide/nitrate transporter At1g27040-like [Cicer arietinum] |
| COG | YP_003896200.1 | 7.00E-10 | major facilitator superfamily transporter [Halomonas elongata DSM 2581] |
| Swissprot | tr|Q9LSE8|PTR35_ARATH | 5.00E-46 | Protein NRT1/ PTR FAMILY 4.2 |
| trEMBL | tr|G7L7Z1|G7L7Z1_MEDTR | 9.00E-145 | Peptide/nitrate transporter {ECO:0000313|EMBL:AET04348.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02859 | 518 | 2329 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002859s00040539.1 | PF00854.16 | PTR2 | 125 | 267 | 2.40E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.183 |
| SRR1783600 | control | 0.146 |
| SRR1783602 | moderate drought stress | 0.268 |
| SRR1811619 | moderate drought stress | 0.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.415 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.548 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.206 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.129 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.295 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.164 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 57.747 |
| SRR2868004 | Drought Stress (root) | 46.745 |
| SRR2967015 | Control (root) | 8.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.039 |
| SRR9715740 | Leaf | 0.068 |
| SRR9715741 | Leaf | 0.083 |
| SRR9715739 | Root | 0.287 |
| SRR9715742 | Root | 0.099 |
| SRR9715743 | Root | 0.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.161 |
| SRR8749028 | MeJA induced 9h | 0.260 |
| SRR8749029 | MeJA induced 9h | 0.385 |
| SRR8749030 | Uninduced | 0.203 |
| SRR8749031 | Uninduced | 0.624 |
| SRR8749032 | Uninduced | 0.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.073 |
| SRR8400027 | Control - Root | 5.108 |