Gene detail

Gene detail information of Glyur002857s00044215.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01380.1	6.00E-52	Homeodomain-like superfamily protein
NR	XP_004506754.1	2.20E-119	PREDICTED: trihelix transcription factor GT-3b-like [Cicer arietinum]
Swissprot	tr\|O80450\|TGT3B_ARATH	6.00E-67	Trihelix transcription factor GT-3b
trEMBL	tr\|G7JN34\|G7JN34_MEDTR	1.00E-110	Trihelix transcription factor GT-3a-like protein {ECO:0000313\|EMBL:AES86860.1}

Sequence

Transcript Sequence

>Glyur002857s00044215.1
CCCACATATATATATAGTAATCAATCTCTCAATTCCTTTTACTTTTCTCANTCTTTTTCTCTCTCCTCCCTCCACATTACCCTCCAAAGGGAAAANCCCATCTTTTTCCGTGTAATTAATCAGATTCATCTTCTTTTCATTCTCTCTTTTCTTTCTAGAACTTATAAGGAAGAGGGGTTCTTAGATTCATTTGGGGCCGGGTCACTAGCTTAAGAGCTTTTTCATTATTCAATTCGAATATATGGAGGGGCATCAACTACTATTACTCCAACAGAGGCAACAACAACAACAGCTTCACGTGGATGATGTTAATATTAATAGGTTCCCTCAGTGGAGTATGGAAGAGACGAAGGAGTTTCTAAGGGTGAGAGGAGAGCTGGATCAGGNTTTCTTGGAGACAAAAAGGAACAAGCAGTTGTGGGAACTCATCTCGAACCATTTGAAGGAAAAGGGTTTCCATCGAAGTCCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGCTATAAGGGATGTGAAACAATGGAGGCTTCTGCGTTGAGACANCAATTCCCATTTTACAATGAAATTCAGGCGATTTTCACTTCAAGGATGCAGAGAATGCTATGGGCTGAAGCTGAAGATAGTTCGAAGAATAAGAAGAAAAAGGGAATGCAACTTTCATCCGAGGATGAAGAGGATTATGTTAATATTGAAGAAAGTGAGGCAGATCAAAAGGGTTGCAACAGAAAGAAGAAAAAAGCTAGGATTGGAAGTGGTGGCAGTAGGTTGAACAATTTGAAGGAGATTTTGGGGGAGTTTGTGAGGCAACAAATGCAAATTGAAGCACAATGGATGGAGGCATTTGAGGCAAGAGAGAATGAGAGGAATTTGAGGGAGATGGAGTGGAGGCAACAAATGGAGGTGTTGGAGAATGAGAGGATAATGATGGAACAAAGATGGAGAGAAAGGGAAGAGCAAAGGAGGGTTAGAGAAGAAGCTAGGGCTGAGAAGAGGGATGCTCTAATCATTGCTCTGATAAACAAGTTAGACAGGCAAGGGACATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02857	20492	22145	+

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003682 chromatin binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002857s00044215.1	PF13837.1	Myb_DNA-bind_4	30	114	2.60E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.797
SRR1783600	control	0.653
SRR1783602	moderate drought stress	2.009
SRR1811619	moderate drought stress	1.720

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.601
DRR006520	Root Summer glycyrrhizin high producing strain	3.381
DRR006521	Root Winter glycyrrhizin high producing strain	3.475
DRR006522	Root Winter glycyrrhizin high producing strain	3.324
DRR006523	Root Summer glycyrrhizin low producing strain	27.465
DRR006524	Root Summer glycyrrhizin low producing strain	27.494
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.681
SRR2868004	Drought Stress (root)	4.894
SRR2967015	Control (root)	2.128

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.963
SRR9715740	Leaf	0.940
SRR9715741	Leaf	3.331
SRR9715739	Root	0.832
SRR9715742	Root	2.039
SRR9715743	Root	1.559

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.396
SRR8749028	MeJA induced 9h	39.553
SRR8749029	MeJA induced 9h	82.472
SRR8749030	Uninduced	48.771
SRR8749031	Uninduced	63.691
SRR8749032	Uninduced	26.448

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.135
SRR8400027	Control - Root	1.858