Gene detail information of Glyur002855s00037376.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10610.1 | 4.00E-51 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_007153735.1 | 0 | hypothetical protein PHAVU_003G060700g [Phaseolus vulgaris] |
| Swissprot | tr|Q0WNR2|BH090_ARATH | 5.00E-62 | Transcription factor bHLH90 |
| trEMBL | tr|V7C6I7|V7C6I7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW25729.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02855 | 2296 | 4411 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002855s00037376.1 | PF14215.1 | bHLH-MYC_N | 10 | 145 | 2.90E-13 |
| Glyur002855s00037376.1 | PF00010.21 | HLH | 258 | 301 | 5.70E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.073 |
| SRR1783600 | control | 0.076 |
| SRR1783602 | moderate drought stress | 0.013 |
| SRR1811619 | moderate drought stress | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.084 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.070 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.152 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.124 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.086 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.079 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.026 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.116 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.049 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.434 |
| SRR8749028 | MeJA induced 9h | 0.089 |
| SRR8749029 | MeJA induced 9h | 0.234 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.471 |
| SRR8400027 | Control - Root | 0.201 |