Gene detail information of Glyur002852s00036140 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | KHN28160.1 | 6.79E-19 | Serine hydroxymethyltransferase, cytosolic [Glycine soja] |
| Swissprot | tr|O24629|SIGA_ARATH | 3.00E-08 | RNA polymerase sigma factor sigA (Precursor) |
| trEMBL | tr|I1LP24|I1LP24_SOYBN | 1.00E-18 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G01600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02852 | 2282 | 3309 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.584 |
| SRR1783600 | control | 2.265 |
| SRR1783602 | moderate drought stress | 3.644 |
| SRR1811619 | moderate drought stress | 3.516 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.989 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.538 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.677 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.124 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.279 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.756 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.059 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.319 |
| SRR2868004 | Drought Stress (root) | 4.596 |
| SRR2967015 | Control (root) | 3.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.910 |
| SRR9715740 | Leaf | 0.587 |
| SRR9715741 | Leaf | 1.062 |
| SRR9715739 | Root | 0.234 |
| SRR9715742 | Root | 0.771 |
| SRR9715743 | Root | 0.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.100 |
| SRR8749028 | MeJA induced 9h | 7.736 |
| SRR8749029 | MeJA induced 9h | 3.500 |
| SRR8749030 | Uninduced | 10.232 |
| SRR8749031 | Uninduced | 9.058 |
| SRR8749032 | Uninduced | 6.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.291 |
| SRR8400027 | Control - Root | 5.023 |