Gene detail

Gene detail information of Glyur002851s00042082

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37100.1	0	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NR	XP_004509187.1	0	PREDICTED: uncharacterized protein LOC101489677 isoform X1 [Cicer arietinum]
COG	YP_290835.1	1.00E-29	hypothetical protein Tfu_2779 [Thermobifida fusca YX]
Swissprot	tr\|Q8LGM7\|MOCOS_SOLLC	1.00E-19	Molybdenum cofactor sulfurase {ECO:0000255\|HAMAP-Rule:MF_03050}
trEMBL	tr\|A0A072TSJ9\|A0A072TSJ9_MEDTR	0	Catalytic/pyridoxal phosphate-binding protein {ECO:0000313\|EMBL:KEH20479.1}

Sequence

Transcript Sequence

>Glyur002851s00042082.1
ATGCATCTCTCACTATGGAAGCCCATTTCTCACTGTGCTGCTATGATCATGGACAAGAAGAGCAGGAAGAAAGATGAATCCATGGTTGAGACAAGGAGAAACCCATCAATGCTCCGAAAGCTTCAAGAAAACAAGCTGAGGGAAGCTCTTGAGGAAGCTTCAGAAGATGGGTCACTCTCCAAATCACAAGACATGGAACCTGACACTGCTGGGAACCAGGATGAGGGCCTTGGGAGATCCAGATCGCTGGCCAGGCTGCACGCACAGCGCGAGTTCCTTCGCGCCACGGCCCTTGCAGCCGAGCGCACATTCGAGTCTGAGGAGGAAATTCCCAGCCTCCAAGAAGCATTTTCCAAGTTCCTTACTATGTACCCCAAGTACCTGTCCTCGGAGAAGGTTGATCAGTTGAGGTCTGATGAATACTCCCATTTGCCACCCAAGGTATGCCTTGACTACTGTGGATTTGGACTCTTCTCTTTTGTTCAGACCCTTCACTATTGGGAGTCTTGCACGTTTAGCTTGTCTGAGATAACTGCAAATTTGAGTAACCATGCACTTTATGGTGGTGCTGAGAAAGGAACTGTTGAGCATGATATAAAGAGTAGAATTATGGACTATCTGAATATCCCTGAGAATGAATATGGCCTTGTTTTTACTGTCAGTAGAGGATCAGCTTTTAAATTGCTGGCTGAATCGTACCCTTTCCAAACGAACAAAAAATTGTTGACCATGTTCGACCATGAGAGCCAGTCTGTTACTTGGATGGCTCAGAGAGCCAGGGAGAAAGGTGCCAAAGTGTACAGCGCATGGTTCAAATGGCCAACTCTCAAACTCTGCTCTACTGATTTGAGAAAACAGATTTCCAATAAGAAGAAGAGGAAGAAGGATTCAGCTACTGGTCTTTTTGTGTTCCCGGTTCAATCTAGAGTAACTGGGGCTAAGTATTCGTACCAGTGGATGGCCTTGGCACAGCAGAACAACTGGCATGTCTTGCTTGATGCCGGATCATTGGGCCCCAAGGACATGGATTCACTTGGCTTGTCCCTTTTCCGGCCAGATTTTATAATTACATCATTTTACAGGGTATTTGGGTATGATCCCACGGGTTTTGGTTGTCTTCTGATCAAGAAATCGGTGATGGCAAGCCTTCAGAATCAATCTGGGAGTACTGGGTCTGGAATGGTAAAGATTACCCCCGAGTTTCCCATGTATTTGAGTGATTCCGTAGATGGTTTGGATAAATTGGCTGGGATTGAAGATGATGAAGTCAATGGGGCTGGTGACATGAGTTCTGAACCTCGTCAGGCATCACAGTTGCCTGCCTTTTCTGGTGCATACACGGCTTCGCAGGTCAGAGATGTATTTGAGACTGAAATGGATCACGACAGCTCTGAAAGAGANGGAACGAGCACTATATTTGAAGANACTGAGAGTNTTTCTGTTGGAGAAATGATAAAGAGCCCTGTCTTTAGTGAGGATGAGTCNTCTGACAACTCNTTTTGGATTGATNTGGGTCAGAGTCCATTGGGGTCNGANAATGCNGGTCNNTCTTATAAACNNAAGNTAGCTTCTCCCCTACCACCATTCTGGTTCAGTGGAAGGAAGAACCAGAAGCAACATTCTCCAAAACCAACTTCCAAGATGTATGGCAGCCCTATGTATGATGACAGAGAGGTAAGCCTAGGTTCTCATGACGAACACCGTGTACTGTCATTTGATGCTGCTGTCCTAATGTCACAAGAANTAGACCGTGTNAANGAGGTCCCNGAAGAAGANCANGTNGAGGAAGTTNATCANTATTCAAGANATGGAAATGGGTCAGATCGTCTGCATGNNAATGAGATCATGGAAGAACCTGGAACCAGCAAANCAGTTCAGAATGGATCTGTTNCTCTGAAAGAATCTTGGCTCAGTAATNCAACTTCTCTTNCTCGGCATCAAAGCNTAGAGAATGGCTCTACCTCTGAAATATGTNCTGATNTTAAAGAGAGTGCCATAAGAAGGGAAACTGAAGGTGAATTTAGGTTGTTGGGTCGGAGAGAAGGGAATCGANATGGTGGTGGTAGGTTTTTTGGTTTGGAAGATAATGAACNCAACAGCAGGGNNAGNAGAGTGTCATTTAGCNTGGAAGACAANCNTAAGGANTACCTANNCCAGACCTTGGANACNGGGGACATATCTGCAACNAGCTTAGATGATGAAGAGGTNTCAAGNGACGGAGAATATGGTGATGGACAGGATTGGGGAAGGAGGGAACCAGAGATAGTATGTCGTAATATTGANCATGTTGATATGCTTGGTCTCAATAAAACTACNCTTAGACTTCGGTTTTTGATAAATTGGCTNGTTACNTCNTTACTGCAACTGAAGTTACNTGTTTCTGATGGGGNTGAAAAGGCAAACCTTGTTCACATCTATGGNCCNAAAATAAAATATGAAAGAGGNGCAGCTGTGGCTTTCAATGTCAGGGACAGAAGTCGGGGGCTAATAAATCCTGAGATTGTTCAAAAGCTGGCTGAAAAAGAAGGAATCTCTCTTGGTATTGGTTTTCTTAGTCATATACAGATTCTTGATAGCTCAAGACAGCAGCGTGGATCTCTGAATCTTGAAGACACAACTCTTTGCAAGCCTATGGAGAATGGTCGGCGCGATGGAAAAGGTAGCTTTGTGAGGCTTGAAGTTGTCACGGCTTCACTGGGATTTTTGACTAATTTTGAGGATGTGTATAAGTTGTGGGCTTTTGTGGCGAAGTTTCTCAACCCATCATTCATCAGGGAAGGTGGTCTTCCTACTGTTCAAGAAGGCTCTGAGACATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02851	25081	27897	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.858
SRR1783600	control	10.036
SRR1783602	moderate drought stress	12.317
SRR1811619	moderate drought stress	11.415

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.183
DRR006520	Root Summer glycyrrhizin high producing strain	15.356
DRR006521	Root Winter glycyrrhizin high producing strain	5.725
DRR006522	Root Winter glycyrrhizin high producing strain	4.815
DRR006523	Root Summer glycyrrhizin low producing strain	13.317
DRR006524	Root Summer glycyrrhizin low producing strain	13.521
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.332
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.879

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.191
SRR2868004	Drought Stress (root)	35.060
SRR2967015	Control (root)	36.822

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.530
SRR9715740	Leaf	14.746
SRR9715741	Leaf	13.975
SRR9715739	Root	4.352
SRR9715742	Root	16.186
SRR9715743	Root	12.862

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.675
SRR8749028	MeJA induced 9h	16.943
SRR8749029	MeJA induced 9h	11.104
SRR8749030	Uninduced	11.458
SRR8749031	Uninduced	7.300
SRR8749032	Uninduced	6.476

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.471
SRR8400027	Control - Root	22.731