Gene detail

Gene detail information of Glyur002851s00042081

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G23540.1	1.00E-157	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	KEH20480.1	0	GDSL-like lipase/acylhydrolase [Medicago truncatula]
COG	NP_923900.1	8.00E-16	esterase [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|O80470\|GDL38_ARATH	0	GDSL esterase/lipase At2g23540 (Precursor)
trEMBL	tr\|A0A072U3S0\|A0A072U3S0_MEDTR	0	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:KEH20480.1}

Sequence

Transcript Sequence

>Glyur002851s00042081.1
ATGAAAGCAATGGCCTTGTTGAAGTGTTACAACATGTTGGTCCTTCTGCTTTTGCTTGTCAATCTGAGCTTTTATTATGGAAATGTTGCTGCTCAGAAAAATGGGTTAGGAGCTTCTTTCATCTTTGGGGACTCTTTGGTGGATGCAGGGAACAATAACTATCTGTCAACTCTTTCTAAGGCAAACATCCCTCCCAATGGAATCGATTTCAAGGCCTCTGGTGGAAACCCTACTGGCCGTTACACCAATGGAAGAACCATTGGTGATATAGTAGGAGAGGAGTTGGGACAGCCAAATTTTGCTGCCCCATTTTTGGCGCCAAATGCAACTGGGAAATCCATACTCTATGGAGTGAATTATGCTTCGGGAGGAGGAGGAATTCTGAATGCGACTGGAAGAATATTTGTGAATAGGATAGGAATGGATGTTCAAATAGATTACTTCAGCATAACAAGAAAACAGATTGACAAACTGCTGGGTGAATCCAAAGCAAAGGAATACATAATGAAGAAATCCATTTTCTCCATCACTGTTGGGGCCAATGACTTTCTCAACAACTATCTCCTCCCAGTTCTCTCCATTGGAGCCAGAATTTCTCAAAGCCCAGATGCTTTCATAGACGACATGATTAATCATTTCAGGGCTCAACTAACCAGACTATATAAAATGGATGCTCGGAAGTTTGTGATTGGAAACGTGGGCCCAATAGGGTGTATACCTTACCAGAAGACTATAAATCAGCTGAATGAAGATGAATGTGTGGATTTGGCTAACAAACTCGCACTTCAATACAATGCCCGATTGAAGGATTTGCTTGCTGAGCTAAACGACAATCTACCNGGAGCCAAATTCGTCCTTGCAAATGTTTATGATCTAGTAATGGAACTCATTAAAAATTATGATAAATATGGGTTCACAACATCGAGNAGAGCATGCTGCGGGAATGGGGGCCAATTCGCAGGGATAATTCCATGTGGGCCTACATCGAGTATGTGCACAGATAGGTACAAGCACGTGTTCTGGGATCCTTACCATCCAAGCGAGGCTGCAAACCTAATTCTCGCCAAGCAGCTACTTGACGGAGACAAGAGATACATCTCTCCTGTGAATCTTAGACAACTTCGGGATCTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02851	11544	13379	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002851s00042081.1	PF00657.17	Lipase_GDSL	40	358	4.80E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.352
SRR1783600	control	26.314
SRR1783602	moderate drought stress	18.931
SRR1811619	moderate drought stress	19.716

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.196
DRR006522	Root Winter glycyrrhizin high producing strain	0.152
DRR006523	Root Summer glycyrrhizin low producing strain	0.096
DRR006524	Root Summer glycyrrhizin low producing strain	0.096
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.402
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.376

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	84.635
SRR2868004	Drought Stress (root)	45.205
SRR2967015	Control (root)	35.884

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.117
SRR9715740	Leaf	0.284
SRR9715741	Leaf	0.496
SRR9715739	Root	21.103
SRR9715742	Root	8.800
SRR9715743	Root	11.887

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.104
SRR8749029	MeJA induced 9h	0.084
SRR8749030	Uninduced	4.714
SRR8749031	Uninduced	26.579
SRR8749032	Uninduced	2.241

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	150.232
SRR8400027	Control - Root	133.138