Gene detail information of Glyur002851s00042079 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50410.1 | 2.00E-32 | OBF binding protein 1 |
| NR | XP_003518090.1 | 2.26E-115 | PREDICTED: dof zinc finger protein DOF3.4 [Glycine max] |
| Swissprot | tr|Q39088|DOF34_ARATH | 8.00E-61 | Dof zinc finger protein DOF3.4 |
| trEMBL | tr|K7K6R9|K7K6R9_SOYBN | 8.00E-116 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G06970.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02851 | 5630 | 6337 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002851s00042079.1 | PF02701.10 | zf-Dof | 26 | 86 | 6.20E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 63.727 |
| SRR1783600 | control | 63.111 |
| SRR1783602 | moderate drought stress | 97.400 |
| SRR1811619 | moderate drought stress | 95.993 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.180 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.544 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.168 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.215 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.148 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.519 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 49.860 |
| SRR2868004 | Drought Stress (root) | 52.087 |
| SRR2967015 | Control (root) | 64.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.276 |
| SRR9715740 | Leaf | 0.183 |
| SRR9715741 | Leaf | 0.541 |
| SRR9715739 | Root | 250.216 |
| SRR9715742 | Root | 104.080 |
| SRR9715743 | Root | 124.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.520 |
| SRR8749028 | MeJA induced 9h | 1.003 |
| SRR8749029 | MeJA induced 9h | 2.838 |
| SRR8749030 | Uninduced | 0.146 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 118.480 |
| SRR8400027 | Control - Root | 106.072 |