Gene detail

Gene detail information of Glyur002844s00045034

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14390.1	7.00E-148	alpha/beta-Hydrolases superfamily protein
NR	XP_003547690.1	0	PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X1 [Glycine max]
COG	YP_724418.1	5.00E-49	hypothetical protein Tery_5033 [Trichodesmium erythraeum IMS101]
trEMBL	tr\|I1MLR6\|I1MLR6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G07280.1}

Sequence

Transcript Sequence

>Glyur002844s00045034.1
CGCTGACTGGCCCAAGTGACCAATAATAAAGCACAAGTAATAAAGCGCTCTCTCTCTCTCTCAATTAATCCACATTTGCCTAATAAGCAAAAACAGTACCCACCACAGAAACAAAAGAACCTCTCTTTCACCGTCACCATCTTTCCCTTTCCATTCCCATAAAGTTTCCCCCATCTTCTGGAAAAACCAAAAAAAAAAAAAAAGAGATACATTGAAGAGCAAAGCAAAGAAGATCTGAAATCAATTCAGTTCCAGAATTCACAACAAACATATATCAAACAAAACACATTAAAAAAATTAAAAAAAAACAGAACACAAACACACACAAAGTGAGAGTGTGTTTTGGTGTGTGTGTGAGTGATGGGTGGGGTAACTTCATCAATGGCAGCGAAATTCGCGTTCTTCCCACCAAACCCAGCATCGTACAAGCTCGCAAATGACAAACTCACTGGGCTTCTTCTACTCACACCTTTCCCTCACAGAGAGAACGTGGAAATCCTGAAGCTACCCACGCGCCGTGGCACAGAGATTGTGGCGCTCTACATTCGACACCCAATGGCCACTTCCACTCTTCTCTACTCTCACGGAAACGCCGCCGATCTGGGTCAGATGTATGAGCTCTTCATCGAGCTCAGTATCCACTTGCGTGTTAACCTCATGGGGTATGACTATTCTGGGTACGGGCAGTCATCAGGGAAGCCAAGTGAGCAGAATACATATTCAGATATTGAGGCTGNATACAAGTGTTTGGAAGAAAGTTATGGTGCCAAGCAGGAAGATATAATCCTTTATGGACAATCTGTTGGAAGTGGCCCAACTTTGGATCTCGCAGCTCGATTGCCTCAATTAAAAGCTGTTGTTCTACACAGTCCAATACTTTCTGGCTTAAGGGTCATGTATCCAGTAAAACGTACATACTGGTTTGACATATATAAGAATATCGATAAAATTCCACTAGTTAATTGTCCAGTTCTCATAATTCATGGTACTTCAGATGAAGTTGTAGACTGTTCCCATGGCAAGCAACTGTGGGAACTTTGTAAAGAGAAGTATGAACCACTGTGGCTCAAAGGAGGCAACCACTGTGATTTGGAGCTCTTTCCCGAGTACATCCGGCACCTGAAGAAGTTCATAACAATGGTCGAGAAGTCTCCATCGCAACGGTACAGTTTCCGAAGGAGTACAGACCAGCAGTTCGAGCAGCCTCGAAAGAGCACGGATATCTTCGAAGTGAGTNGAAAGAGCACGGATCGTAGAGAGAAGCCGAGGAAGAGCACAGACAGGCCAGAGAAGCTGAAGAACTTGTCCAATAGTAATGCTGATGTGTTGGAGAAATTGAGGATGTCTTTTGATCACAACAAGGAGAGGTCTCGGAGAAGTGTGGACTGTCATGAGAAGTCCCGGAAAAGCATTGATCATCAATTGGAAAAGGCAAGGAAGAGTGTTGACAGGCTGGACAGAATAAGGAGTGGATAAATAATTAATTCTTCTTGTTGTTATGATGAAATTATATTANTCATGCATGCAATTCACACGGGGTTGTTTTTGTGGGTTTTTTTTCTCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02844	22082	26723	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002844s00045034.1	PF12695.2	Abhydrolase_5	70	242	1.90E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.412
SRR1783600	control	22.496
SRR1783602	moderate drought stress	19.632
SRR1811619	moderate drought stress	19.817

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.949
DRR006520	Root Summer glycyrrhizin high producing strain	28.103
DRR006521	Root Winter glycyrrhizin high producing strain	0.997
DRR006522	Root Winter glycyrrhizin high producing strain	0.973
DRR006523	Root Summer glycyrrhizin low producing strain	15.350
DRR006524	Root Summer glycyrrhizin low producing strain	15.350
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.916
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.789

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.796
SRR2868004	Drought Stress (root)	15.974
SRR2967015	Control (root)	14.997

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.118
SRR9715740	Leaf	11.887
SRR9715741	Leaf	13.385
SRR9715739	Root	1.782
SRR9715742	Root	6.476
SRR9715743	Root	3.536

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.335
SRR8749028	MeJA induced 9h	6.679
SRR8749029	MeJA induced 9h	7.151
SRR8749030	Uninduced	0.603
SRR8749031	Uninduced	0.525
SRR8749032	Uninduced	1.040

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.018
SRR8400027	Control - Root	31.731