Gene detail

Gene detail information of Glyur002837s00040389

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25700.1	1.00E-149	Eukaryotic aspartyl protease family protein
NR	XP_007153336.1	0	hypothetical protein PHAVU_003G026700g [Phaseolus vulgaris]
Swissprot	tr\|Q766C3\|NEP1_NEPGR	4.00E-60	Aspartic proteinase nepenthesin-1 (Precursor)
trEMBL	tr\|V7C7T2\|V7C7T2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW25330.1}

Sequence

Transcript Sequence

>Glyur002837s00040389.1
ATGGCCTCACTCTCTTCTCTCATTNTCCTCTTCCTCCTCTTCACCTTCTTCCATTTCACCAACTCCACAGAATACCTGAAGCTACCGCTAGTGAAGAAGAAGAACCCACTCTCGTCGCCAGCCGAGCTCCTCTCCGCCGACCTCCGCCGCCTCTTCGGCCACCGTCGCGCCGCCAAAACCCCGCTAGTCTCCGGAGCCTTCACCGGCTCCGGCCAGTACTTCGCTGACCTCCGAATCGGTTCTCCGCCGCAGCGCCTCCTTCTAGTCGCTGACACCGGCAGCGACCTCGTGTGGGTGAAGTGCTCCGCCTGCCGGAACTGCTCCGACCACCGACCCGGATCCGCATTCCTCGCCCGACACTCTAAAACATTCTCTCCCCACCACTGCTACGACTCGCCGTGTCGACTCCTTCCACACCCGAAACTCGCCACACCTTGCAACAACCACACGAGGATCCACACCCCATGCCGCTACGAGTATTCCTATGCGGACGGGTCCACCACAAGCGGGTTCTTCTCCAAGGAAAAGACGACGTTCAACACCAGCAACGGAAACGAGGTGAAAATCAAAAACCTCTCGTTCGGGTGCGGGTTTCGAATCTCTGGCCCCAGCGTCACCGGTGCGAGCTTCAACGGCGCACAAGGTGTAATGGGCCTGGGCCGTGGGCCCATTTCGTTTAGTTCCCAATTAGGACGGAGGTTCGGGAACAGATTCTCTTACTGTCTACTNGACTACACCCTATCACCGCCTCCGAAGAGTTACCTCACACTAGGCGGTTCCATTAACGACGACGTTTCGAGAAAGAAGTTCAGTTACACGCCGTTGCTAACAAACCCTCTCTCCCCAACGTTTTACTACGTCGCCATCGAGGGCGTAACCGTCGACGGCGCAAAATTACCGATAAGCCCTTCCGTTTGGGCCATTGACGAGGGAGGCAATGGTGGAACCGTCGTGGACTCCGGCACGACGCTGACGTTCCTGGCGGAGCAGGCTTACCGGCNGGTGTTGGCGGCGTTCCGGAGGCGCGTGAGGCTTCCGGAGGCGGAGGGTCCCGCGCTTGGGTTCGACCTGTGCGTGAACGTCTCCGGCATGTCGAGGCCGAAGCTGCCGAGGCTGAGGTTCGGTCTCACCGGAAAAGTTGCGCTGTTGCCGCCGGNGAGGAACTATTTCATCGAGGCGGCGGATCGGGTCCTGTGCCTCGCGATCCAACCCGTGAAACCGGGTTCGGGTTTTTCGGTTATAGGGAATCTGATGCAACAGGGTTACTTGTTTGAATTCGATTCGGACCGGTCCCGGCTCGGTTTCTCGCGTCACGGTTGCGCCATTCCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02837	28398	29729	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002837s00040389.1	PF14543.1	TAXi_N	73	259	2.50E-36
Glyur002837s00040389.1	PF14541.1	TAXi_C	284	437	2.00E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	68.254
SRR1783600	control	65.076
SRR1783602	moderate drought stress	28.796
SRR1811619	moderate drought stress	25.885

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.832
DRR006520	Root Summer glycyrrhizin high producing strain	29.853
DRR006521	Root Winter glycyrrhizin high producing strain	11.097
DRR006522	Root Winter glycyrrhizin high producing strain	10.546
DRR006523	Root Summer glycyrrhizin low producing strain	23.954
DRR006524	Root Summer glycyrrhizin low producing strain	23.196
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.561
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.623

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.523
SRR2868004	Drought Stress (root)	5.118
SRR2967015	Control (root)	5.139

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.628
SRR9715740	Leaf	4.916
SRR9715741	Leaf	2.104
SRR9715739	Root	120.514
SRR9715742	Root	50.297
SRR9715743	Root	59.548

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.689
SRR8749028	MeJA induced 9h	3.388
SRR8749029	MeJA induced 9h	3.686
SRR8749030	Uninduced	0.324
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.213

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.363
SRR8400027	Control - Root	52.408