Gene detail information of Glyur002835s00039584 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G24020.1 | 4.00E-60 | Uncharacterised BCR, YbaB family COG0718 |
| NR | XP_003540114.1 | 1.94E-112 | PREDICTED: uncharacterized protein LOC100782796 [Glycine max] |
| COG | YP_007121309.1 | 1.00E-18 | YbaB/EbfC family DNA-binding protein [Microcoleus sp. PCC 7113] |
| trEMBL | tr|I1LT58|I1LT58_SOYBN | 7.00E-113 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G25500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02835 | 3356 | 9576 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002835s00039584.1 | PF02575.11 | YbaB_DNA_bd | 91 | 182 | 4.40E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.950 |
| SRR1783600 | control | 18.087 |
| SRR1783602 | moderate drought stress | 13.863 |
| SRR1811619 | moderate drought stress | 13.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.208 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.258 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 61.323 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 58.598 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.757 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.463 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 49.601 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 50.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.532 |
| SRR2868004 | Drought Stress (root) | 21.759 |
| SRR2967015 | Control (root) | 21.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 31.841 |
| SRR9715740 | Leaf | 45.469 |
| SRR9715741 | Leaf | 33.661 |
| SRR9715739 | Root | 2.865 |
| SRR9715742 | Root | 6.583 |
| SRR9715743 | Root | 5.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.328 |
| SRR8749028 | MeJA induced 9h | 9.948 |
| SRR8749029 | MeJA induced 9h | 10.843 |
| SRR8749030 | Uninduced | 8.745 |
| SRR8749031 | Uninduced | 5.263 |
| SRR8749032 | Uninduced | 5.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.520 |
| SRR8400027 | Control - Root | 24.966 |