Gene detail

Gene detail information of Glyur002834s00043435.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25220.1	2.00E-127	KNOTTED1-like homeobox gene 3
NR	XP_004514061.1	0	PREDICTED: homeobox protein knotted-1-like LET12-like isoform X2 [Cicer arietinum]
Swissprot	tr\|P48000\|KNAT3_ARATH	3.00E-163	Homeobox protein knotted-1-like 3
trEMBL	tr\|A0A072V8D4\|A0A072V8D4_MEDTR	0	Class II knotted-like homeobox protein {ECO:0000313\|EMBL:KEH38097.1}

Sequence

Transcript Sequence

>Glyur002834s00043435.1
TGCCTCCAACATCGATCATTGATCAATCTTTGTCTTATTAAATGTAAAAACTCCAATAAGGTGGCACCACAAACCCATCCACGTTATCACCAATCCCAGCCCTTCGATCCTTTTCCCACTTCCATCCCCTCGATCTTCGTGTCATCCCTTCAAAAAGTCTTCCCCCGTAAGAAAAGTGCTTTTCCAAACCTCTTCCTCCCTTCCTAATTCACTTCCTCTTCCATTCCCACTCTCGCTTCCGCTTCTCTCCGATTCCCACCGTGATTTTTCCCACCGCAAAANTCTCAACCCTCAAATGTAGAAGAAAAAAAAAGAAGAAGAAACAAAAGAATAATAAACAAAATGGCTTTTCACGACCATCTATCACACGAAATCACTTTTCAGCCTTTCACGGAGGAGCAACAGTTAAGTCAGCAAAGCAGAGATATGCAGAGGATGCTTCCACTCTCCGGCGGTGGATCAGCGCCGACGTGGCTCAACAACGCCNCCGCACTCCGGCAGCAGAATTTCCTCCACCTTCAGCCCGACCACACGGCGCACCAAAACGACGACGTAAGGGTGGGACTGATGGAGAAAAGCACAACAACGGATCGGAACCGGACGGAGAGCAACGCGGAACCGGAGGAGCTTGCGGAATACAAAGCAGACATTCTGGGTCACCCACTGTACGACCAGCTTCTCTCCGCTCACGTTTCGTGTCTGAGAATCGCCACGCCCGTGGACCAGCTTCCACGCATCGACGCGCAGCTTCAACAGTCGCAGCGGGTGGTCGACAAGTACTCTGGCCTTGGGAATGGTGTGATAGATGAGAAGGAGCTTGATCAATTCATGACGCATTATGTTCTCCTGCTTTGTGCTTTTAAAGAACAATTGCAACAACATGTCCGTGTCCATGCCATGGAAGCTGTTATGGCATGTTGGGAGCTCGAGCAGTCTCTGCAAAGCCTGACTGGTGTATCTCCCGGTGAAGGAACGGGCGCAACAATGTCCGACGATGAAGACGACCAAGCAGAGAGCAATGGCGCCAACTTATACGAAGGAAGCCTAGATGGCGCNGATAGTCTCAGCTTTGGCCCTCTTGTTCCCACCGAAAGTGAAAGATCTTTGATGGAGCGTGTGAGGCAAGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGACAAGATTGTGGACATTAGAGAAGAAATTCTACGGAAGAGAAGAGCGGGAAAGCTCCCTGGTGACACTACTTCCCTTTTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCTTATCCCACGGAAGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGATTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGAAAAAGGAACTGGCACACTAATCCTTCGTCTTCTAGTGGCTCCAAGAGCAAGCGCAAGAGTAGTGCAGGTGAAACAAGTAACCAGAGTTTCATGTGAATGGAGATACCTAGCTATTTCGAACAAGGAGAAAAAAGAAATAAACTGTCAACATTCTTCATTTTATGCCACAATGGTGGAAAGGATTCATAGGACAAGAGCTTATAGTGAAAAGCATGAAACTGAAGTGGTGGAATATGGATCTTACAAAGCAGAATTTTATATTTATATATGATACCAACCACTGTTTAGAATACTTGGTTCAATTACAAAGAATTACATATTATATTATTGTTCATGTATATGGGGCTGCTGCTTGATATCTGATATTGTTGCAGATGCTGATTCATATATATTTGCAGTTCATTGTTTATTTCTGTTGCGTTTAAAACACACTTGAGGGGTAAGTGCATCGCCCCGCAAGAGTAACATAGAAACGAAGTTCAGATATTACCCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02834	14128	22713	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002834s00043435.1	PF03790.8	KNOX1	98	140	9.50E-18
Glyur002834s00043435.1	PF03791.8	KNOX2	153	204	2.90E-20
Glyur002834s00043435.1	PF03789.8	ELK	262	283	4.10E-07
Glyur002834s00043435.1	PF05920.6	Homeobox_KN	302	341	2.50E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.103
SRR1783600	control	30.456
SRR1783602	moderate drought stress	53.684
SRR1811619	moderate drought stress	53.354

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.350
DRR006520	Root Summer glycyrrhizin high producing strain	43.190
DRR006521	Root Winter glycyrrhizin high producing strain	315.849
DRR006522	Root Winter glycyrrhizin high producing strain	308.895
DRR006523	Root Summer glycyrrhizin low producing strain	82.007
DRR006524	Root Summer glycyrrhizin low producing strain	82.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	146.651
DRR006526	Leaf Summer glycyrrhizin high producing strain	146.001

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	70.485
SRR2868004	Drought Stress (root)	84.562
SRR2967015	Control (root)	94.239

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	87.568
SRR9715740	Leaf	89.399
SRR9715741	Leaf	90.096
SRR9715739	Root	17.737
SRR9715742	Root	46.604
SRR9715743	Root	43.532

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.734
SRR8749028	MeJA induced 9h	38.095
SRR8749029	MeJA induced 9h	22.359
SRR8749030	Uninduced	9.832
SRR8749031	Uninduced	5.377
SRR8749032	Uninduced	5.887

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.237
SRR8400027	Control - Root	42.364