Gene detail information of Glyur002833s00042089 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51540.1 | 3.00E-164 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_004510579.1 | 0 | PREDICTED: kelch repeat-containing protein At3g27220-like isoform X1 [Cicer arietinum] |
| COG | YP_003704652.1 | 3.00E-25 | Kelch repeat-containing protein [Truepera radiovictrix DSM 17093] |
| Swissprot | tr|Q9LK31|Y3272_ARATH | 0 | Kelch repeat-containing protein At3g27220 |
| trEMBL | tr|V7B7R0|V7B7R0_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW12888.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02833 | 20803 | 25568 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002833s00042089.1 | PF13418.1 | Kelch_4 | 182 | 224 | 0.00018 |
| Glyur002833s00042089.1 | PF13964.1 | Kelch_6 | 235 | 283 | 1.70E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.320 |
| SRR1783600 | control | 9.409 |
| SRR1783602 | moderate drought stress | 1.160 |
| SRR1811619 | moderate drought stress | 1.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.968 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.620 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 57.728 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 55.631 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.791 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.295 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.472 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.990 |
| SRR2868004 | Drought Stress (root) | 0.827 |
| SRR2967015 | Control (root) | 1.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.076 |
| SRR9715740 | Leaf | 0.536 |
| SRR9715741 | Leaf | 1.631 |
| SRR9715739 | Root | 7.802 |
| SRR9715742 | Root | 15.674 |
| SRR9715743 | Root | 14.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 134.652 |
| SRR8749028 | MeJA induced 9h | 241.616 |
| SRR8749029 | MeJA induced 9h | 290.136 |
| SRR8749030 | Uninduced | 98.987 |
| SRR8749031 | Uninduced | 224.614 |
| SRR8749032 | Uninduced | 190.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.054 |
| SRR8400027 | Control - Root | 21.701 |