Gene detail

Gene detail information of Glyur002831s00039359.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24230.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_003525917.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230-like [Glycine max]
COG	YP_001192956.1	4.00E-33	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|C0LGK9\|Y2242_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At2g24230 (Precursor)
trEMBL	tr\|I1KDD2\|I1KDD2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G27230.1}

Sequence

Transcript Sequence

>Glyur002831s00039359.1
ATGGGTTTGGGAGTGTTTGGTTGTGTTCTAGTTCTGGCACTCTTCTTCAAGCATTTAGCATCCCAGCAGCAACCAAACACTGATGGTTTTTATGTGTCTGAGTTCTTGAAGAAGATGGGTTTAGCATCCTCCAAGGCCTACTACAACTTCTCTTCTTCTGTCTGTTCATGGAAAGGGGTTACCTGTGATGCCAAGACTGGGAGAGAAGAACACGTTGTTGTTGAGTTAGTTGTCTCTGGAATGGGCCTCTCTGGTCCTATCCCTGACACCACCATAGGAAAGCTCAGCAAGCTTCAATCTTTGGACCTCAGCAACAACAGAATCACTGGCTTGCCTTCAGATTTCTGGAGTTTAACNTTGCTCAAGAGCCTTAACCTCTCCTCCAATNAAATTTCTGGTTCACTGGCTAATAACATTGCAAACTTTGGTTTGCTAGAAGTATTTGACTTATCCAGTAACAATTTCTCTGGGGAAATTCCTGAAGCTGTTGGTTCCTTTGTGAATCTGAGGGTCCTCAAACTTGACCACAACAGGTTTGAACAAAGCATACCTTCTGGGATTCTCAAGTGCAAGTCCCTTGTTTTATTTGATGTCTCATCAAATCAGCTTAGTGGGACACTCCCAGATGGTTTTGGTTCTGCTTTTCCTAAGCTCAGTACCTTGAACCTTGCTGGGAATAATATTTATGGACATGATTCAGATATTTCTGGGTTAAAGTCCATTGTGAGTCTCAACATATCTGGCAATTTGTTTCAGGGTTCAGTCATGAGCATGTTTCAGGGAAGGCTAGAAGTCATGGACCTTAGCAGAAACCAATTTCAAGGACACATTTCTAAGGTACAGTCCTTATTCTCTAATTACAATTGGTCTGATTTGGTTTATCTGGATTTGTCAGAGAATCAGCTCAGTGGGGAGATTTTTCAAATTTTGAACAAATCCCAGAANCTAGAGCACCTTAATCTTGCTCACAATAGATTCACCAGACAGGAATTCCCCAAGGTTGAAATGCTCTCCAGATTGGAATATCTGAACTTGTCCAAAACTAGTCTGNTTGGTTCCATTCCTGCTGAAATCTCACAACTGAGTAATTTGCATGCCCTTGATGTTTCTATGAATCATCTTATAGGGCAAGTACCCTTAATGNGGAACAAAAATCTCCAAGTTCTTGACCTTTCAAACAACAATTTGAGTGGAGAAGTCCCTCCATCTGTCTTGGAGAAGCTCCCATGGATGAGGAAATACAACTTCTCTAACAATAACTTAACTCTTTGTGATTTGGAAATCAACAAAACAGCTATCCTCAAAACAGCATTCATTGGATTGCTGAACAGTTGCCCAATTGCTGCTAACCCAAGTCTTTTCAAGAAAAGAGCCACNGAACAAAAGGGAATGAAGCTAGCTCTGGCATTGACCCTCTCAATGATCTGCTTGCTTGCTGGCCTTTTGTTTCTAGCATTTGGCTGCCGTAGGAAAATGAAATCGCAGCGGCGGCCGGTTAAGCAAACTTCATACAAAGAACAAAACATGTCAGGTCCCTTCTCATTCCACACTGATTCAACCACTTGGGTGGCTGATGTTAAGCAAGCAACTTCTGTACCAGTAGTAATCTTTGAGAAGCCACTGTTGAACATTACCTTCGCGGACCTCTTGGCCACGACTTCAAATTTTGATCGGGGTAGTACCCTTTTGGCTGAAGGGAAATTTGGGCCTGTTTATAGAGGTTGTCTACCTGGTGGCATTCATGTAGCAGTTAAAGTTCTGGTCTTTGGATCTACTTTGACTGATGAGGAAGCTGCAAGAGAGCTCGAGTATCTCGGTAGAATCAAGCACCCCAATCTCGTTCCTCTAACCGGATATTGTGTAGCTGGGGATCAGAGGATTGCCATATATGATTACATGGAGAATGGTAACTTGCAGAATTTGCTTTATGACTTGCCACTTGGGGTGCTACAGAAGACAGATGATTGGAGCACAGATACATGGGAAGAAGAAGAACATGGCAAGTTTTCTCAGCCAGAATTTGACACCCCAACACCAAAATCCGATGTGTACTGTTTTGGTGTTGTTCTCTTTGAGCTTCTAACTGGGAAGAAGCCAGTTGGAGATGATTACCCTGGTGATGAGAAAGAAGCAACAACTTTGGTAAGTTGGGTCAGAGGATTGGTAAGAAAGAACAAAGCTTNAGGAGCTATTGATCCAAAAATTCGCGACACCGGACCGGAAGAACAAATGGAGGAGGCCCTTAAGATTGGTTATCTTTGCACTGCTGACCTTCCTTCCAAGCGACCAAGTATGCAGCAAGTAGTTGGACTTCTTAAAGATATTGAACCTACTATTGTCAATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02831	15373	17985	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002831s00039359.1	PF13855.1	LRR_8	87	131	8.70E-10
Glyur002831s00039359.1	PF00560.28	LRR_1	145	162	1.1
Glyur002831s00039359.1	PF00560.28	LRR_1	168	189	0.38
Glyur002831s00039359.1	PF00560.28	LRR_1	385	408	0.00054
Glyur002831s00039359.1	PF07714.12	Pkinase_Tyr	562	644	1.60E-11
Glyur002831s00039359.1	PF07714.12	Pkinase_Tyr	678	771	6.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.362
SRR1783600	control	15.550
SRR1783602	moderate drought stress	14.119
SRR1811619	moderate drought stress	13.663

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.245
DRR006520	Root Summer glycyrrhizin high producing strain	11.965
DRR006521	Root Winter glycyrrhizin high producing strain	20.132
DRR006522	Root Winter glycyrrhizin high producing strain	19.029
DRR006523	Root Summer glycyrrhizin low producing strain	17.506
DRR006524	Root Summer glycyrrhizin low producing strain	17.677
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.224
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.041

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.449
SRR2868004	Drought Stress (root)	4.855
SRR2967015	Control (root)	6.443

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.728
SRR9715740	Leaf	2.335
SRR9715741	Leaf	2.198
SRR9715739	Root	4.929
SRR9715742	Root	13.092
SRR9715743	Root	12.111

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.029
SRR8749029	MeJA induced 9h	0.050
SRR8749030	Uninduced	0.142
SRR8749031	Uninduced	0.014
SRR8749032	Uninduced	0.040

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.696
SRR8400027	Control - Root	7.042