Gene detail information of Glyur002829s00039099 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32060.3 | 3.00E-50 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
| NR | KHN38031.1 | 4.87E-79 | 40S ribosomal protein S12 [Glycine soja] |
| COG | YP_006363103.1 | 2.00E-09 | 50S ribosomal protein L7Ae [Thermogladius cellulolyticus 1633] |
| Swissprot | tr|Q9XHS0|RS12_HORVU | 7.00E-66 | 40S ribosomal protein S12 |
| trEMBL | tr|I1KVL0|I1KVL0_SOYBN | 2.00E-79 | 40S ribosomal protein S12 {ECO:0000256|RuleBase:RU000670} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02829 | 16446 | 18245 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002829s00039099.1 | PF01248.21 | Ribosomal_L7Ae | 6 | 99 | 1.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 254.923 |
| SRR1783600 | control | 222.815 |
| SRR1783602 | moderate drought stress | 293.208 |
| SRR1811619 | moderate drought stress | 291.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 455.535 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 456.197 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 151.413 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 151.733 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 330.457 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 344.648 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 63.406 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 61.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 204.860 |
| SRR2868004 | Drought Stress (root) | 178.221 |
| SRR2967015 | Control (root) | 184.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 50.915 |
| SRR9715740 | Leaf | 47.874 |
| SRR9715741 | Leaf | 50.437 |
| SRR9715739 | Root | 243.989 |
| SRR9715742 | Root | 130.416 |
| SRR9715743 | Root | 152.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 207.886 |
| SRR8749028 | MeJA induced 9h | 81.109 |
| SRR8749029 | MeJA induced 9h | 175.379 |
| SRR8749030 | Uninduced | 35.242 |
| SRR8749031 | Uninduced | 27.703 |
| SRR8749032 | Uninduced | 79.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 114.948 |
| SRR8400027 | Control - Root | 118.073 |